BAC Information

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BAC

Clone NameMSMg01-076A23
Chromosome14 (Build37)
Map Location 27,856,488 - 27,856,772
singlet/doubletsinglet
Overlap geneIl17rd
Upstream geneLOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1
Downstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076A23.T7 (MSMg01no076_a23.b1)MSMg01-076A23.TJ (MSMg01no076_a23.g1)
ACCAG298726AG298727
length767778
length of high quality
(start - end)
---285 (128 - 412)
definitionCHROMAT_FILE: MSMg01no076_a23.b1 PHD_FILE: MSMg01no076_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:54 2005CHROMAT_FILE: MSMg01no076_a23.g1 PHD_FILE: MSMg01no076_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAAAGAAGAACAGAACAAACTGCTCGTTCCCAACTCCCGGGGTCGGAA
AAACAAAAAAAAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCCGCGGAAATCTTTTTCTCGCCCACAATCAGCAATACTTTCTATT
TCCCAACGAAGACGAAATCTTTTAAATTTGATGAACCTAGCCATGAAGAA
AAGAGACATATTTCCAAACCCACAAGTGAAAAACAAGGAGAACATGCCAG
ACTGACTTATGATCAAGAATTTATAGTAAAGCTATTTATAATGGACACCA
AAGGAGAGTGGAGAGCCAGATAACCCTGCAAAATGAAAACTTCAGAGCAA
CCCTAGAGGATATGAAAAAGGAAAAAATTATACTTTGGAGCCTATTCTAT
ATCAAAACGATAATGTACTTTAATAATCATTTAGAATATGACAAATACAC
TGGATGATTTATCTGCTGCTGTCACTATTCTGTGAAAAATAATTCACCCC
ATAACATGGACAGAGACAGAGAATTACAAGATAAAACAAAAATTATAACA
CAATTAACTGTGAACAGGAAAAAACATCATATGGGAGCTATAAACATATG
ATAAAAATCAACAAATGTGACAATAAATCATAAAATATTAAAAAAATACA
ACATTGAACATAATGACATAGAATGAAATTAATTAAAATCCCAATAAAAA
ATAATTAAAAAATATCATTTAACAATAGGAGAGAATCGAATGTTTATATC
ACTTTAACATTATTCAA
NNNNNNNNNNNNNNNNNNNCCCCCCCNCCCCCCCCCCCCCCCCCCCACNC
CNCCCCAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGATTGGACTTTTATCAGGGA
CCTAAATTTTAACCAGCTGGAACCCTCAACCCCCACACCCCAATACCACC
CTGTTCTTCTCTACCTTTGGAGATGAAGTATTTGCCTTAAATGGGAAACT
TGTAGTTCACTGTAAAGACAGTGCCAGCATAGTTTCCAAATGGCTGGAGA
CACTCTTTTGGGGGAAGACGTTTAGAAATGGTAGTTCAGACACAATAGAC
CAGGAAATACGTACCCCACCTAGGTTAGGAGACAAGAAACAGCTCACAGG
AAAAACTACTAAACAGAAGATGGACTTTTTTTTTTTAGTTTTTTAGTTGG
TTTGTTAACTTGCCTGCTTGCTTTTTAAGATAGGGTGCCATTATGTAATC
ATTCCTGCTAGTCTTTAACTCTTGATCTTCCTGCTCTGCCTCCCAAGTGT
TTAGGGGTATGGACAACATGCCTGGCCTTTGGAATTCCTTCCTTAGCAGG
ACAGTGGGGCAAGTTCGGTAACCTCACGGCACAAGGGATTGACATATTAA
ATCGTAAAGGTACCCCTCACACAACAAATTTGCCATCAAAAATAAGAACT
GGCGTTTAAAAAGAGAATTTAAAGGCACAAAGAATTTGTTAGGTAAGCAA
GAAATACTGTGACTTCCGATCCCTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_a23.g1 MSMg01no076_a23.g1 CHROMAT_FILE:
MSMg01no076_a23.g1 PHD_FILE: MSMg01no076_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:54 2005
         (285 letters)



>mm_chr14_27856288_27856972
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggattggacttttatcagggacctaaattttaaccagctggaaccctcaacccccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttggattggacttttatcagggacctaaattttaaccagctggaaccctcaacccccaca 426

                                                                       
Query: 61  ccccaataccaccctgttcttctctacctttggagatgaagtatttgccttaaatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccccaataccaccctgttcttctctacctttggagatgaagtatttgccttaaatgggaa 366

                                                                       
Query: 121 acttgtagttcactgtaaagacagtgccagcatagtttccaaatggctggagacactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acttgtagttcactgtaaagacagtgccagcatagtttccaaatggctggagacactctt 306

                                                                       
Query: 181 ttgggggaagacgtttagaaatggtagttcagacacaatagaccaggaaatacgtacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgggggaagacgtttagaaatggtagttcagacacaatagaccaggaaatacgtacccc 246

                                                        
Query: 241 acctaggttaggagacaagaaacagctcacaggaaaaactactaa 285
           ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 245 acctagggtaggagacaagaaacagctcacaggaaaaactactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)