BAC Information

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BAC

Clone NameMSMg01-076D10
Chromosome14 (Build37)
Map Location 114,205,250 - 114,205,489
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076D10.T7 (MSMg01no076_d10.b1)MSMg01-076D10.TJ (MSMg01no076_d10.g1)
ACCAG298844AG298845
length715720
length of high quality
(start - end)
240 (73 - 312)170 (74 - 243)
definitionCHROMAT_FILE: MSMg01no076_d10.b1 PHD_FILE: MSMg01no076_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:06 2005CHROMAT_FILE: MSMg01no076_d10.g1 PHD_FILE: MSMg01no076_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXAATCGTCAGGGATCCGCGGA
ATTCAAGTTTACAAAAAAGACACTGATGTTTGTTTTCTATATTCAAATGA
GGGGTTGATACTAAATACACCAAGCTACTATTTGATAAAGAACTATATGC
TTAATTTAAAAAAAATTGTATCAGAAGTAGTTTTTATAAATGAAAAATTT
GTCTGTGCTCCCATGGTGTTGGTTTAACCATACTCATGAGTAAATTTGGA
AGTTTTCTTTCTTTTTTAACGAATGGCATAATTGAGCACATATGTCATAC
AAAGGACACAAATTTTTTTATAGGCGTTTGCTGCCCCATATGAGGAACAA
CATTATGAACTAACCAGTAACCCCAGAGTTCCCTGCTAAACCACCAATCA
TAGAAAACACATGGCGGCACTCATGTCTCTAGCTGTATATGTACCATACG
ATGGCCTATTTGGTCATCCACGCACTGACAGCCCCTTGTCCCTGTGAAGG
TCAAGTGCTCTAATATAGGTCAATGCCAGGACTTACTACACTGGACCCGT
TCGCGTTGTCGAATACGCCCGATTCCATTTACTCATTATTCCACTCCTCT
CCCCCTTTTACCCCCCTTCTTTCCCTCCTTCCCCCCCCTCCCATTCCCTC
TTATCTTCTTTTCCCCTCCCCCTTCTCCACCCTTTCCCCTTCTCCTCTTA
ATTCCCCCCTCCCTC
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXGGTTCGTACCGTGTAGGNG
AACTATAGAATGACACAAAGAATTCACTCTGTAGAGCAGGCTGGCCTCGA
ACTCAGAAATCCTCTTCCCTCTGCATCCCAAGTGCTGGGATTAAGGTGTG
TGCCACCACTGCCCAGTAGGATATGCTCTTTTAGCTGGTTTGCCTTGCCT
GTCCTCAGTGCCAGGGTGAGTGCCTAGGCTGAAGTGTCAGGGTGGTTTAT
ATTCTCATGGGGACCTCCACCAGCTCAGAGGATAAGGGGATGCGGCAGAG
GAGAAGGATCTTTTCCTGCTTTCCAAACCCAACCTCACTCCCTTCTTCTT
CCTTCTTCCCCCTCCCCCTCTTCTTTTTCCCCCTCTTTTTTCCATTCCCA
CATCTTTTCCCTTCCTCCCCCCCATTTCCTTTCCATTCCTTCCTCTTCTT
CTCTTATCCTTCCCCTCCCTCTTTCTCCCTCTTTCCTTCCCCTTTTTCCC
TTTCCTCCTCCTTCTTTCCCTTTTTCTTTCCCCCCCCCTCTTTCCCTTTC
CTTTCTTTTCCCCCCCTTCCCCCTCTTTCCCCCCACTTTCTCCCCTTTCT
CTTTCCCCTTCTCCTTCCCTTTTTCTTCTTCTTACTTTCACCCCTTCTTT
CCTTTTTTTTACCTATTCCTCTCTTTTTTATCCTCCCCTCTCTCCTTTTT
CTCCCCTTCCATCCGTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_d10.b1 MSMg01no076_d10.b1 CHROMAT_FILE:
MSMg01no076_d10.b1 PHD_FILE: MSMg01no076_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:06 2005
         (240 letters)



>mm_chr14_114205050_114205689
          Length = 640

 Score =  381 bits (197), Expect = e-110
 Identities = 230/241 (95%), Gaps = 2/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatgtttgttttctatattcaaatgaggggttgatactaaatacaccaagctactatt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 ctgatgtttgttttctatattcaaatgaggggttgatacaaaatacaccaagctactatt 381

                                                                       
Query: 61  tgataaagaactatatgcttaatttaaaaaaaattgtatcagaagtagtttttataaatg 120
           |||||||||||| ||||||||||||  ||||| |||||||| ||||||||||||||||||
Sbjct: 380 tgataaagaactttatgcttaatttttaaaaatttgtatcataagtagtttttataaatg 321

                                                                       
Query: 121 aaaaatttgtctgtgctcccatggtgttggtttaaccatactcatgagtaaatttggaag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 aaaaatttgtctgtgctcccatggtgttggtttaaccgtactcatgagtaaatttggaag 261

                                                                       
Query: 181 ttttctttcttttttaacgaa-tggcataattgagcacatatgtcatacaaaggacacaa 239
           ||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 260 ttttctttcttttttaa-gaaatggcataattgcgcacatatgtcatagaaaggacacaa 202

            
Query: 240 a 240
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)