BAC Information

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BAC

Clone NameMSMg01-076I03
Chromosome14 (Build37)
Map Location 79,002,872 - 79,002,988
singlet/doubletsinglet
Overlap geneDgkh
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076I03.T7 (MSMg01no076_i03.b1)MSMg01-076I03.TJ (MSMg01no076_i03.g1)
ACCAG299068AG299069
length839838
length of high quality
(start - end)
---117 (136 - 252)
definitionCHROMAT_FILE: MSMg01no076_i03.b1 PHD_FILE: MSMg01no076_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:30 2005CHROMAT_FILE: MSMg01no076_i03.g1 PHD_FILE: MSMg01no076_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGCACCCCTCGTATATAAATAGTATTACACATTTTTTTCAAAAAACACT
TAAGAAAAAAAAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCAATATAATCCATATATTAAGTGATGCACAA
ACTTCAATAATTCAGACCCACTCATAGGATAACAGAGAGTACCCCTGTAC
CTCCCCCCCCATCTGATTATTAAATAATATCCTCAGAGGCTAATTTCTGA
AGTTATCTCTGTGATGCCTCCTACCTTTTACTATCTGATCACCCTTGATT
AATTCCCTGCTTTTATATTGATGACTTCTGACACTTGTTTGTGATTCAAC
CATATTTTGCCCTGTAAACTTGTCCACCTCCTCGAACTGACTCATAAGCT
CCTTCCATGTCCTTTTCTACTTTTATTTCTCTTTTGTTCCTTTTTGTTTT
TCTTTTGTTTTTTCCTTTGTTCTTTTTTGTGTCTTGCCATTTCTTTTTTG
GTTTAGTCCCACCACAAGTATTGTCCCTGCTAACTTTTCCTTTATCTACT
GTTCCTACTCTCCCCTCATTTCTTTTGCTTTCTCTTCCCCCCTCGCTTTA
TCTCTATTTCCTCTCTCACCATTTCACAACCTCACTCAATTTTATATTAC
AATACCCTCGGTCCGTTTTCATCTCACCTCTCTAACGTTCACTATCAATA
TCCCCACTTCCCTCCTTTCTTCCCTGCATTCTCTCCCTCCTTTTCCTCTC
ACGGCCCCCTACTTTTCCTATTCGTANACTTGTCGCTGGGTCTCCTCCGC
GCGCCGGCCGTGTACCCCTCCTCCCTCGTACGTGCCCTT
CCCCTCCCCTCCNNNNNNNTTNTTNCCNNCCNCTCNCCCCCTTTCTTTGT
TTTATTNTTNTACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTATTTCCACTT
ACGCAAGTCTGTTTCCCTTCTTACTACTTAAAGTTATGGATGAGCCAGCA
GTGCAGCCCTCTGAGCCAGTCAGTCCGTCTTGTGACTATGATACAGAAAC
AGATGAAGCTAAAGAGGACGACGCGAAAGAGTAGCTATCAGGTGAGAAGT
CAATGATGACTTCATCAGGAAAGTTCAGTTACTACTGGCTTTGTTTTTAT
TTGATTTTATGTATGAAAAGAACTGCAGAAATTTATATTTATTCTAAAGG
ATCTTGCTCACCATTGTGTTCTTTTTTGTATCACTCTTATCCTAAAGTAT
TATTTTTATATTATTTTTTTGTATATTTAATTTATATTATTTCTTATTAC
GAACCCTTCCCTCACTATCCCCCCATTAATCCCTATCATACCTTTTTGCT
CTTTATCTCTTTAACTTATCTTGCCATTTATTTACTATTTACCCAGATAT
ATCTCCCCATTTTTCTTAACTGTTTCTCTTTATACCACTTTCTCACGCAA
TACCCTCCACTCACACACACCCCTGTACTTCCCTGCCCTCCCCTCGCTTT
ACCAGCCCCATTCTCCTTCTCTCATCTTATTACTTCTTATTTATTCTCCC
CCAATCTGCTCTTTTGAGGAATTTTGTTAAATCACAAATCTTCTTTCGCA
CACACCACGCTTAATATATTTCCTGTCCTACCGTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_i03.g1 MSMg01no076_i03.g1 CHROMAT_FILE:
MSMg01no076_i03.g1 PHD_FILE: MSMg01no076_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:30 2005
         (117 letters)



>mm_chr14_79002672_79003188
          Length = 517

 Score =  226 bits (117), Expect = 3e-64
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttatttccacttacgcaagtctgtttcccttcttactacttaaagttatggatgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attttatttccacttacgcaagtctgtttcccttcttactacttaaagttatggatgagc 258

                                                                    
Query: 61  cagcagtgcagccctctgagccagtcagtccgtcttgtgactatgatacagaaacag 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagcagtgcagccctctgagccagtcagtccgtcttgtgactatgatacagaaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)