BAC Information

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BAC

Clone NameMSMg01-076I12
Chromosome14 (Build37)
Map Location 82,170,579 - 82,170,997
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076I12.T7 (MSMg01no076_i12.b1)MSMg01-076I12.TJ (MSMg01no076_i12.g1)
ACCAG299086AG299087
length724726
length of high quality
(start - end)
563 (43 - 605)497 (73 - 569)
definitionCHROMAT_FILE: MSMg01no076_i12.b1 PHD_FILE: MSMg01no076_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:32 2005CHROMAT_FILE: MSMg01no076_i12.g1 PHD_FILE: MSMg01no076_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAGAGCAAGTCGAGGGAGCCATCTTGGGTCCTGGATCCCTCAGAGAC
TAGTCTTCACAGGTGGGAATGTGGACCTCAGAAGTAACACAGCTTCTGGG
ACAGGCAGAAGCAACACAGCTTCTGGGACAGAACCCCTTTCAGGCTCCAG
ACATTCTGGGAACTTCCCCACCAGAGGAGAGGTGTTTGCGCAGGAGGGCT
CTGACCACCAAAGCAGGTGAGAAAGCCATCTTGTGTCCCCTGGCCCTCGG
GGACCAGTCTGTGCAGGTGAGCATGCAGAATGCAGAGGCAACATCTCTTC
TGGGACAGGCCCTGTTTCGAGCATTCATCTTCAGCCAGGAGGCAGGTATG
AATGCCAGATATCTGTGCACATTCTCTGCAAGAGGAGAGCTTGCTTGCAG
AGAGTACTGTGACCACTGTGACTGAGGAGAGAGCTAGACTCCCAGGTCTG
CTGACAGAGGCTAACAGAATCACAGGAGGTACAAGCTCCAAACAGAGACA
ACTATAACAACTAACTCCAGAGATTACCAGATGGCAAAATGCAAACTTAA
GAATCATACTAACAGAAACCAAGACAACTCACCATCAGAAGAACCCAGCG
CTCCCACCTCAGCCAGTCCTGGATACTCCACGATGCCCAGAAAGCAAGAC
TCGGAACTAAAATCATATCTCATG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCCAACCACACACACCACCTCTAACA
AATCAATATGGAGCATATTTTATTAATAGACAATATTGTCTGTTTTGATC
TCATTAATGGCATTGGTATGCATTTGGTTTTTTTATTTTTAATTTTATGT
TGTTGCATGTATGGAGGGTAGAAGATGATGTGAGGCACCCTGGTGCTGGG
GCTGAACTGTCGCCCACATGAGGGGAGTGCTGGGAACTGAACTATGGCTC
CCTGCAAGAAGCAGGATGTGATTTTAGTTTTTGAACCTTCCTTTAATCCT
CAGTTAAATTTTCAATAGATATACTTGGGTATTTCAAGTAGAAAATACAT
GCTAATACTTATTTTCATACCTGGTATAAATAACCGGTAATAACTTGGTT
GGAGTAGTACAATACTGAGAATTTGTTTTAGTACATTCAGATTTTAAATT
ATATGTTTGGGATATTTTAGAGGAGGCGATGACTTTTATAAATAAAGGTC
TTTACGTATTCTTTGCAAATTATATTTCATGGGCTAATGGTTTCATATTG
CTTCAAATTCAAGTTATTTTTTCGTCTGACCTACTATCAGCGACTTCCTT
CTGCTACTTTTTCATTTTACTCACACTTAACTCTGCCTTTTCTGCAACTT
CGCCGCGCTTTCTGTCACTCTCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_i12.g1 MSMg01no076_i12.g1 CHROMAT_FILE:
MSMg01no076_i12.g1 PHD_FILE: MSMg01no076_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:32 2005
         (497 letters)



>mm_chr14_82170102_82170997
          Length = 896

 Score =  650 bits (336), Expect = 0.0
 Identities = 394/420 (93%), Gaps = 15/420 (3%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatgcatttg--gtttttttatttttaattttatgt-------tgt---tgca--tg 137
           ||||||| |||||   |||||||||||||||||||||||       |||   ||||  ||
Sbjct: 896 tggtatgtatttgttttttttttatttttaattttatgttggtgcatgtgagtgcagttg 837

                                                                       
Query: 138 tatggagggtagaagatgatgtgaggcaccctggtgctggggctgaactgtcgcccacat 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 836 tatggagggtagaagatgatgtgaggcaccctggtgctggggctgaactgttgcccacat 777

                                                                       
Query: 198 gaggggagtgctgggaactgaactatggctccctgcaagaagcaggatgtgattttagtt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 776 gaggggagtgctgggaactgaactatggctccctgcaagaagcaggatgtgatcttagtt 717

                                                                       
Query: 258 tttgaaccttcctttaatcctcagttaaattttcaatagatatacttgggtatttcaagt 317
           ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 716 tttgaaccttcttttaatcctcagttaaattttcaattgatatccttgggtatttcaagt 657

                                                                       
Query: 318 agaaaatacatgctaatacttattttcatacctggtataaataaccggtaataacttggt 377
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 656 agaaaatacatgctaatacttattttcatacctggtataaatacccggtaataacttggt 597

                                                                       
Query: 378 tggagtagtacaatactgagaatttgttttagtacattcagattttaaattatatgtttg 437
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tggagtagcacaatactgagaatttgttttagtacattcagattttaaattatatgtttg 537

                                                                       
Query: 438 ggatattttagaggaggcgatgacttttataaataaaggtctttacgtattctttgcaaa 497
           ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 536 ggatattttagaggaggtgatgacttttataaataaaggtctt-atgtattctttgcaaa 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)