BAC Information

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BAC

Clone NameMSMg01-076J09
Chromosome14 (Build37)
Map Location 96,050,322 - 96,050,640
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076J09.T7 (MSMg01no076_j09.b1)MSMg01-076J09.TJ (MSMg01no076_j09.g1)
ACCAG299127AG299128
length684733
length of high quality
(start - end)
325 (48 - 372)188 (134 - 321)
definitionCHROMAT_FILE: MSMg01no076_j09.b1 PHD_FILE: MSMg01no076_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:37 2005CHROMAT_FILE: MSMg01no076_j09.g1 PHD_FILE: MSMg01no076_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCATTCCTATCTCAATATGCTTGACCACCCATCAAGTTTTCC
ATGTCCCTTTCCAGTAGCCTCCATTTCTATCAGAAATTTGTTGGCCTATT
TTTTTTTCACTATTACTGTTACATACATGTATGTATACAAATATATAAAC
CAAACCCACTGAGTCTGTTTTGTTGTTTATGTGTATAAAATTCAATGGCT
GATCACTTTGTATTATATTACTAGGCTCTAATTTTTGGGGAAGTCAATTA
TCCTTTTGGATGCTGTGATATTTTTCTACTTTCTACATTAAAATATTTGC
TCATATTGTTAATGTTTAGGCAGCCATTATAAGGAGGTATGATCTTACTA
TAAACTTCTTGTTGTTTGGCTCCTATATTGTTTTTATACCCTCTTTAATA
TTTCCCTGAACTTCATATGGTCTGTGAGTTGTACCATGGATCCTCTGATC
TTTTTGCCTAATATACACTTATCATCGCACGTGTTCCATGTTGACTGACT
TAACTCACTCACTACGACATTCTCTATTTCCATAGTCATACTCATTAGCT
GATACATTACCTAATCTTTGTTACGATCAGAATAGTTACGCAATTCGCCT
AACATACAGTAGTCCTAAACCAAACCATTCCTCA
NNTTTTTTTTTTNNNNNTTTTTCTTCCTTTTTTTCTCCCTTTCTCCCCTT
TTTCTTCCTTCCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTCAACATCCTTAATCATCAGGGA
AATGCAAATCATATCAACCCTAAGATTCCACCTCACACCAGTCAGAATGT
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTCGGTGCGATTGCAGGCTTGCACAATCACT
CTGGAAATCCGTCTGGCGGTTCCTCTCTATATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGTATATATCCAGAATATGCCCCAATT
GGTAAGAAGGATACATGCTCCACTATGTTCATAGCAGCCTCATTCATAAT
AGCCAGACTCTGGAAAGAACCCATATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACATTGGACTACTACTCCGCTATTAAAAAG
AATGAATTTACGAAATTCCTAGCCTCTTGCATGCACCTGTTCTCCATCTT
CCTGATCGAGGTATCACATTCATATAGGAAACTCAACAATAAGTATTCAC
TGCACCGTGCATATTTATCCAAAACCTAGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_j09.b1 MSMg01no076_j09.b1 CHROMAT_FILE:
MSMg01no076_j09.b1 PHD_FILE: MSMg01no076_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:37 2005
         (325 letters)



>mm_chr14_96050116_96050840
          Length = 725

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattcattcctatctcaatatgcttgaccacccatcaagttttccatgtccctttcca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaattcattcctatctcaatatgcttgaccacccatcaagttttccatgtccctttcca 466

                                                                       
Query: 67  gtagcctccatttctatcagaaatttgttggcctatttttttttcactattactgttaca 126
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 465 gtagcctccatttctatcagaaatttggtggcctatttttttttcactattactgttaca 406

                                                                       
Query: 127 tacatgtatgtatacaaatatataaaccaaacccactgagtctgttttgttgtttatgtg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tacatgtatgtatacaaatatataaaccaaacccactgagtctgttttgttgtttatgtg 346

                                                                       
Query: 187 tataaaattcaatggctgatcactttgtattatattactaggctctaatttttggggaag 246
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 345 tataaaattcaatggctgatcactttgtattatattactagggtctaatttttggggaag 286

                                                                       
Query: 247 tcaattatccttttggatgctgtgatatttttctactttctacattaaaatatttgctca 306
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcaattatcctcttggatgctgtgatatttttctactttctacattaaaatatttgctca 226

                              
Query: 307 tattgttaatgtttaggca 325
           |||||||||||||||||||
Sbjct: 225 tattgttaatgtttaggca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)