BAC Information

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BAC

Clone NameMSMg01-076L10
Chromosome14 (Build37)
Map Location 62,270,928 - 62,271,209
singlet/doubletsinglet
Overlap geneLOC668253
Upstream geneSpata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg
Downstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L10.T7 (MSMg01no076_l10.b1)MSMg01-076L10.TJ (MSMg01no076_l10.g1)
ACCAG299224AG299225
length713702
length of high quality
(start - end)
156 (52 - 207)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no076_l10.b1 PHD_FILE: MSMg01no076_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:47 2005CHROMAT_FILE: MSMg01no076_l10.g1 PHD_FILE: MSMg01no076_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGT
GGAATTCTCTTTTCCCATAGATCTATCCAGCTAGCCTCCTCTGTATTTTG
AGACAAGGAACATTACAGTACATAGTCTAGTCTGGCCTTACATTTGTGAG
CCTCCTTACCTGATTTCTCAAGTGTCAGGTTACTGTCTTGTGCCACCACA
CCCAGTTAAATATGTTGTGAATCAAAATTACTAATATAGACAGTCAGATG
AAAGTCAATAAATAACATATATAGTCTGAATTCTATATATCTTCACAGGT
AAAACGTGGCTTCATGTTTATATGCTTGCGAAGCACATAATTTAAATGTA
GCCTACTAAATAACACACAACCATTGCGTACAACTTCCTAGCTTCTGGAA
TTAAAACTAGTCTGCCCCATATCTTACTACATTTTATCTGTTTACTCTAC
CATGCCTTTTTTTTTTAATCGTCCCTTGACCCCATTCTTCATTGCTTACG
TCTGTCTCTGTTTCCTATATTGTTTCCTATTCTATCTACCTTCCCCCCGA
TCTCTGTCGTCCTTATCACACCCTTCCTATCCCTCGTTTTTACCACTATC
TCGCCCCTTTCCTCCCATCTTGCCGACCCTTCCCCCACTCCAATTTTCAC
CTCCTTCTTATTCCCCCCCTCTCATAACCGTTTTCCCTTTTCATCTTTTT
TCCCTCCTCCATC
AACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATGTACTCATATAGATACTGAAT
AGTAAGCAGGGAACCAGAACGGCTTTGTTTACAGGAGAGTACTATAGGCT
GAAACTGAAGAGGGGCTGTGGATTTGTCCAATCATCTTGCATCCATCATA
TAAACTGTACAAGCAATTATGAATGCTGAACATAAAAGGAACTTCTGATG
AGTGGGATATAATGTCCCCACAAACTGCTGTCTATTTCCAGGAATGAAAA
AAAGAGTAACTATACAGTGTTCACACATTGACAAGGGGATCAAAATTATG
ATCATCAGTGAGTACTATATGGGTGTCATGTTCTACAAGTGACACTCTGA
CGGACAGGCAACAGAGTCTGTGCAGTACAAGGCTGAAATGCATAGTCTCC
ATCTAACTATAAGGAAACATGGAGTGAACCTTATTCTGAAAATGTGCGAC
TCTGCATCCTTCAAATACATCACGGACTTACAAGACTAAGAGTGGAAATT
TTCCAGAACAATTGATGCTATTAAGAAATACGATAATTAATAGCTTTCCC
TGGTCGAGACAGGTACCCGTCATGTAGGGAGGAACACCATAATGGTCCAA
CCTCTCAAATCGTATCATGCAGTTAAAAACGCTGCTCACGTGCATGTTTA
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l10.g1 MSMg01no076_l10.g1 CHROMAT_FILE:
MSMg01no076_l10.g1 PHD_FILE: MSMg01no076_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:47 2005
         (283 letters)



>mm_chr14_62270728_62271409
          Length = 682

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgtactcatatagatactgaatagtaagcagggaaccagaacggctttgtttacagg 60
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 482 aaatgtactcatatagattctgaatagtaagcagggaaccagaagggctttgtttacagg 423

                                                                       
Query: 61  agagtactataggctgaaactgaagaggggctgtggatttgtccaatcatcttgcatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agagtactataggctgaaactgaagaggggctgtggatttgtccaatcatcttgcatcca 363

                                                                       
Query: 121 tcatataaactgtacaagcaattatgaatgctgaacataaaaggaacttctgatgagtgg 180
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcatataaactatataagcaattatgaatgctgaacataaaaggaacttctgatgagtgg 303

                                                                       
Query: 181 gatataatgtccccacaaactgctgtctatttccaggaatgaaaaaaagagtaactatac 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 gatataatgtccccacaaactgctgtctatttccaggaatg-aaaaaagagtaactatac 244

                                                      
Query: 241 agtgttcacacattgacaaggggatcaaaattatgatcatcag 283
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtggtcacacattgacaaggggatcaaaattatgatcatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space:   184402
Effective search space used:   184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)