BAC Information

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BAC

Clone NameMSMg01-078G10
Chromosome14 (Build37)
Map Location 82,434,360 - 82,434,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078G10.T7 (MSMg01no078_g10.b1)MSMg01-078G10.TJ (MSMg01no078_g10.g1)
ACCAG299746AG299747
length725724
length of high quality
(start - end)
272 (46 - 317)385 (68 - 452)
definitionCHROMAT_FILE: MSMg01no078_g10.b1 PHD_FILE: MSMg01no078_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:43 2005CHROMAT_FILE: MSMg01no078_g10.g1 PHD_FILE: MSMg01no078_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCTCTATCCCAGTAGCAAGAGCATGTAGAGTATCATCTGAAAAT
TAGAAACAGTTGAGGCTAAGCTCTTAGTATAAAGTAAGTTATAAAGTCAC
AGCAACCCGGGCAAAGGACATTTCTTAGTCTAAGACTTTCTGGGCTAGTG
AGAAACGACAATGGTCAAACCAGAAAGAACAGTGTTGGACCCTTTAACCT
GAAATCAGTCTGTTGTTTTGTCTTTGTCCTCCATATCCCTAATAAAATAA
AATTCCCACATCCAAATAAGTATTAATGAATGTGAGAAGCCATCTAAAAG
AGGCTAAACCTAGCAGTTGACGTTCCTGAGATGGTCTACCATTTTTGCAT
GGGCTGATATGGATTACCTCATAGAGGAATGGTCCATGAAACTTCTTTCT
TAGAATGACTCTTGTTATTGATATGCCTTTTCTGTCATTAATAACTTAAC
AATAACAATTCTTGGGCATTAATATCCCATATCGCATATATTGTCTGTAG
AACTATAACGTATAACTCTCTTGCACCAATGCTAAGTATACCACTACCCG
ACTTCTTAATTCCAACACATGATACCATATTCAATACCTAAATTTTATAT
TTGAATTTTCTAAATTTCCCCTTCCCCCTAAGAAGGAGATATGAGTGCTT
CCTGAATATTCCCCTGCTCGCTCAG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCTCCAGTAAAAAGACAGGACCTCAAGTGGAG
GGATGGGCTTGCCATCTCACAGTAAAAAACTCTGGCCCAGAATTGTGCCA
GTCTAAAAGAACTTAGAAGACAAATTTGGAGAAGAGATTGAAGGAATGGC
TGTCCAGTGACCAGCCCAATTTGGGATCCATCTCATGGTATTGCACCAAG
GCCTGAAATTCTTATGCTATGACGTGCTTACAGGGAGACAACTAGCAAGG
CTGTCCTCTTGTGAGGTCCAACCTGTATCTGCTTGATACAGATGCAGATA
CTTGTACTCAACCATTGGACTGCAGTTTGGGACCCCTATGTTTAAATTAG
GGGGTGCATTGAAGAAGCGAAAGGGAGGGCAATCCCATAGGAACGCCAGT
GGTCACAACTAACCTGAACCCCTGGGAGCTCCCAGAAATTGAGTCACCTT
TCAGGAATCATACATGGGCTGATCCCAGGCCTCTGGCACATAAATAGTCT
TAGGACTGTCTGGCTCTGGTCTTCAGTGGTAGAAGATGCACCTACTCCTT
CTCAGACTTGTGGCCCCAAGTTGTGGAGTGTTGGTTGTTGCTTTTCTACA
TATATTTCCCACCCTGACCCTGGTCGAGTATTTTACGCATCTCCTGACCT
GTTCGATCGACCATCCCCCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_g10.b1 MSMg01no078_g10.b1 CHROMAT_FILE:
MSMg01no078_g10.b1 PHD_FILE: MSMg01no078_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:43 2005
         (272 letters)



>mm_chr14_82434156_82434827
          Length = 672

 Score =  487 bits (252), Expect = e-142
 Identities = 264/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagctctatcccagtagcaagagcatgtagagtatcatctgaaaattagaaacag 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcagctctatgttagtagcaagagcatgtagagtatcatctgaaaattaaaaacag 264

                                                                       
Query: 65  ttgaggctaagctcttagtataaagtaagttataaagtcacagcaacccgggcaaaggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgaggctaagctcttagtataaagtaagttataaagtcacagcaacccgggcaaaggac 324

                                                                       
Query: 125 atttcttagtctaagactttctgggctagtgagaaacgacaatggtcaaaccagaaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttcttagtctaagactttctgggctagtgagaaacgacaatggtcaaaccagaaagaa 384

                                                                       
Query: 185 cagtgttggaccctttaacctgaaatcagtctgttgttttgtctttgtcctccatatccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtgttggaccctttaacctgaaatcagtctgttgttttgtctttgtcctccatatccc 444

                                       
Query: 245 taataaaataaaattcccacatccaaat 272
           ||||||||||||||||||||||||||||
Sbjct: 445 taataaaataaaattcccacatccaaat 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)