BAC Information

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BAC

Clone NameMSMg01-079A23
Chromosome14 (Build37)
Map Location 96,050,326 - 96,050,620
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079A23.T7 (MSMg01no079_a23.b1)MSMg01-079A23.TJ (MSMg01no079_a23.g1)
ACCAG300244AG300245
length694696
length of high quality
(start - end)
295 (66 - 360)---
definitionCHROMAT_FILE: MSMg01no079_a23.b1 PHD_FILE: MSMg01no079_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:34 2005CHROMAT_FILE: MSMg01no079_a23.g1 PHD_FILE: MSMg01no079_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCCTATCTCAATATGCTTGACCACCCATCAAGTTTTCCATGTCCCT
TTCCAGTAGCCTCCATTTCTATCAGAAATTTGGTGGCCTATTTTTTTTTC
ACTATTACTGTTACATACATGTATGTATACAAATATATAAACCAAACCCA
CTGAGTCTGTTTTGTTGTTTATGTGTATAAAATTCAATGGCTGATCACTT
TGTATTATATTACTAGGGTCTAATTTTTGGGTAAGTCAATTATCCTTTTG
CATGCTGTGATATTTTTCTACTTTCTACATTAAAATATTTGCTCATATTG
TTAATGTTTAGGCAGCCATTATAACGAGGTATGATCTTACTATAGACTTC
TTGTTGTTTGGCTCCTATATTGTTTTTATACCCTCTTAAACATTTCCCTG
AACTTCATATGGTCTGCGAGTTGTACCATGTATCTTCTGAGCTTTTTGCC
TAATATCCACTTATCAGTGCATGTGTTCTATGGTGACTGATTTACCCCAC
TCAGTATGATATTTTCTAGTTCCATAGTCATACTTAGTATTGACAATATA
ATAATCTTGTCAGGAACATATAGGCAAGCATTTGTATAAATATATTATGC
TCAACAAAAACAGGACTTATATTTGCTGTGGTAACACACAGATA
GCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCCCGCGCATTCTCCCTGAGGATACCGAATGGCAGAGAAGCACCTGAAA
AAATGTTCCCATCCTTAATCTCAGGGAAATGCAAATCATAACAACCCTAA
GATTCCACCTCACACCAGTCAGAATGCCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
TTGGCATTGCAGGCTTGTACCACCACTCTGGAAATCCGTCTGGCGGCTCC
TCATAAAATTGTACATAGTACTACCGGAGGATCCAGATATATCTTTCCTG
GCCACACCTCCAGAAGATGCTCCTACTGGTTAGAAGGCAATATGCTCCAC
TATGTTCTTAGTATCCTTATTTATATTAGCCAGAAGTTGGTAAGAAACTC
AGATGCTCTTTATCAGAGGAATGGATACAGAAAATGTGGCAATACTCTAT
ACAATGGAGTACTTCTCCTCAACTTTAAAGAATGATTCTCCGATATTACT
AGTCAAATGTATGGACCTGGAATGTATTCTTCCTTGACCAAATTTTCACT
TTTCATAGGGAAACTCATCAATATTATTCACCTCACTCTCTTCCGGTATT
TTTCCCTAAACCCCACCATCTCCAAGATTCAAAACACACTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_a23.b1 MSMg01no079_a23.b1 CHROMAT_FILE:
MSMg01no079_a23.b1 PHD_FILE: MSMg01no079_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:34 2005
         (295 letters)



>mm_chr14_96050126_96050820
          Length = 695

 Score =  547 bits (283), Expect = e-160
 Identities = 292/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcttgaccacccatcaagttttccatgtccctttccagtagcctccatttctatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatgcttgaccacccatcaagttttccatgtccctttccagtagcctccatttctatcag 436

                                                                       
Query: 61  aaatttggtggcctatttttttttcactattactgttacatacatgtatgtatacaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaatttggtggcctatttttttttcactattactgttacatacatgtatgtatacaaata 376

                                                                       
Query: 121 tataaaccaaacccactgagtctgttttgttgtttatgtgtataaaattcaatggctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tataaaccaaacccactgagtctgttttgttgtttatgtgtataaaattcaatggctgat 316

                                                                       
Query: 181 cactttgtattatattactagggtctaatttttgggtaagtcaattatccttttgcatgc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct: 315 cactttgtattatattactagggtctaatttttggggaagtcaattatcctcttggatgc 256

                                                                  
Query: 241 tgtgatatttttctactttctacattaaaatatttgctcatattgttaatgttta 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtgatatttttctactttctacattaaaatatttgctcatattgttaatgttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)