Query= MSMg01no079_h01.b1 MSMg01no079_h01.b1 CHROMAT_FILE:
MSMg01no079_h01.b1 PHD_FILE: MSMg01no079_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:04 2005
(630 letters)
>mm_chr14_117457073_117458102
Length = 1030
Score = 1164 bits (602), Expect = 0.0
Identities = 623/630 (98%), Gaps = 1/630 (0%)
Strand = Plus / Minus
Query: 1 tgtaacacttgtcaaaagattttcttccaagccatagaagaattataagttaaaaaaaaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 660 tgtaacatttgtcaaaagattttcttccaagccatagaagaattataagtt-aaaaaaaa 602
Query: 61 tggcatttttaaaagacaaagaccaagaaaagaatatagttttcttaatttaaataatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggcatttttaaaagacaaagaccaagaaaagaatatagttttcttaatttaaataatta 542
Query: 121 attaaaagattagccagacatctctatgctgggactagtgatagcagtgccagacaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attaaaagattagccagacatctctatgctgggactagtgatagcagtgccagacaagac 482
Query: 181 catacttctgggagagaactcacataagtttaaattctaccattgaggtgacagcaaata 240
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 481 catacttctgggagagaactcacatgagtttaaattctaccatcgaggtgacagcaaata 422
Query: 241 taaaatcttatgtgagtaaaatagaaattccatggttaaaacatatgactacaaattgaa 300
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaaatctaaggagagtaaaatagaaattccatggttaaaacatatgactacaaattgaa 362
Query: 301 gaaatattacctttaaattcttgtatagatttaattattttatggtacatgtatgaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaatattacctttaaattcttgtatagatttaattattttatggtacatgtatgaatgt 302
Query: 361 tttctctgcttatatgcatatacaccatagagtgccctggtaacagagagggtgtcagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctctgcttatatgcatatacaccatagagtgccctggtaacagagagggtgtcagat 242
Query: 421 cacatggaactaaagttatgggtggtcaagaagcgccatgttggttctgggacctgaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacatggaactaaagttatgggtggtcaagaagcgccatgttggttctgggacctgaacc 182
Query: 481 caggttctctgagggagcatgcgctctcaaccacatctctctagtgaagagaaaatttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caggttctctgagggagcatgcgctctcaaccacatctctctagtgaagagaaaatttgt 122
Query: 541 aatgtcaattccacgaactgaggacagacagcaggataaaaaatgggagcaactatgttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgtcaattccacgaactgaggacagacagcaggataaaaaatgggagcaactatgttt 62
Query: 601 tacatatggacaaaggacgtgagtatatcc 630
||||||||||||||||||||||||||||||
Sbjct: 61 tacatatggacaaaggacgtgagtatatcc 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_h01.g1 MSMg01no079_h01.g1 CHROMAT_FILE:
MSMg01no079_h01.g1 PHD_FILE: MSMg01no079_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:04 2005
(544 letters)
>mm_chr14_117352140_117353082
Length = 943
Score = 975 bits (504), Expect = 0.0
Identities = 532/544 (97%), Gaps = 6/544 (1%)
Strand = Plus / Plus
Query: 1 tccactaaacccatctagtactgggcgtttttcagttgggaggctattaatgactgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tccactaaacccatctagtactgggcgtttttcagttgggaggctattaatgactgcttc 265
Query: 61 tatttctttaggggtttggagactatttaaatggtttatctgatcctgttttaactttgg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatttctttaggggtttggagtctatttaaatggtttatctgatcctgttttaactttgg 325
Query: 121 cacctggtatctgtctagaaaattgtccacttcatccatattttccaattttgttgagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cacctggtatctgtctagaaaattgtccacttcatccatattttccaattttgttgagta 385
Query: 181 taagcttttgtagtaggatcagatgtttttttttcaatttccatgatttctgttatgtct 240
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 386 taagcttttgtagtaggatctgatgattttttttcaatttccatgatttctgttatgtct 445
Query: 241 ctctctttctcccttttcatttttgattttattaatttggataatgtctctttccctctg 300
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 446 ctctctctctcccttttcatttttgatgttattaatttggataatgtctctttccctctg 505
Query: 301 gttagtctggctaagggtttatctatcttgtttttttttctttttttttttcttctggat 360
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 506 gttagtctggctaagggtttatctatcttgttttttt--ctttttttttt----ctggat 559
Query: 361 ttctagacagaatctgtctggaaaatagacaaatgtatccattcttattgagttttggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttctagacagaatctgtctggaaaatagacaaatgtatccattcttattgagttttggga 619
Query: 421 ttcctttctctttagggaggctacacaattgcttcagaaagtcatggtcataaaataggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 620 ttcctttctctttagggaggctacacaattgcttcagaaagtcatggtcataagataggc 679
Query: 481 ttggaaacaggagtggtggcccatatttctaatctgagtactcagaaagcaaaaccagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttggaaacaggagtggtggcccatatttctaatctgagtactcagaaagcaaaaccagat 739
Query: 541 ggac 544
||||
Sbjct: 740 ggac 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
