BAC Information

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BAC

Clone NameMSMg01-079K21
Chromosome14 (Build37)
Map Location 27,707,596 - 27,856,772
singlet/doubletdoublet
Overlap geneAsb14, Appl1, Hesx1, Il17rd
Upstream genePlac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c
Downstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079K21.T7 (MSMg01no079_k21.b1)MSMg01-079K21.TJ (MSMg01no079_k21.g1)
ACCAG300703AG300704
length714708
length of high quality
(start - end)
405 (39 - 443)463 (66 - 528)
definitionCHROMAT_FILE: MSMg01no079_k21.b1 PHD_FILE: MSMg01no079_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:22 2005CHROMAT_FILE: MSMg01no079_k21.g1 PHD_FILE: MSMg01no079_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,707,596 - 27,707,996)(27,856,310 - 27,856,772)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TTTCATGGCCAACAATCAGCAAATACTTTCTATTTCCCAACGAAGACGAA
ATCTTTTAAATTTGATGAACCTAGCCATGAAGAAAAGAGGTCATATTTCC
AAACCCACATGTGAAAAACAAGGAGAACATGCCAGACTGTCTTATGATCA
AGTATTTATAGTAAAGCTATTTATAATGGTCACCAGAGGAGAGTGGAGAG
CCAGATAACCCTGCAACATGGAAACTTCAGAGCAGCCCTAGAGGATATGA
AAAAGGTAAAAATTAGTCTTTGGAGCCTATTCTATATCAAAACGGTAATG
TACTTTATAAATCATTTAGATTTGCCTAATACACTGGCTGTTTTAACTGC
TGCTGTCCCTATTCTGTGTAGTATAATTCACCCCATAGCATGGTCGTTGT
CAGTGCTTACTAGATAATACAGAATTTTAATCACCATTTACTGTGTACAG
GAAAAATCATCTTTTGGGTGCTATAACCATTGATAAAAACTCACCAGCTG
TGTCTAATACAAATCAATAATAAACACTTTTCACATTGCTAAAATGATCT
AGGTTGTCTTTTTTTAAATCCCTTCAAAAGTTCCATTCAACTAATTATTC
ACAAATTAGGGTTTTTTGCCTTGTAATTATTTTACATTATTTACTTCCTC
CTTTGCCTTACCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGGATTGGACTTTTATCAGGGACCTAAATTTTAA
CCAGCTGGAACCCTCAACCCCCACACCCCAATACCACCCTGTTCTTCTCT
ACCTTTGGAGATGAAGTATTTGCCTTAAATGGGAAACTTGTAGTTCACTG
TAAAGACAGTGCCAGCATAGTTTCCAAATGGCTGGAGACACTCTTTTGGG
GGAAGACGTTTAGAAATGGTAGTTCAGACACAATAGACCAGGAAATACGT
ACCCCACCTAGGGTAGGAGACAAGAAACAGCTCACAGGAAAAACTACTAA
ACAGAAGATGGATTTTTTTTTTTTAGTTTTTTAGTTGGTTTGTTAACTTG
CCTGCTTGCTTTTTAAGATAGGGTGTCATTATGTAATCATTCATGTTAGC
CTTTAACTCTTGATCTTCCTGCTCTGCCTCCCAAGTGTTTAGGGGTATGG
ACAACATGCCTGGCTTTGGAATTCCTTCTTAGCAGGACAGTGGGGGAAGT
TTGGGAACCTCACGGCACAAGGGATTGACATATTAAATCGCATAGTTACC
CATCACAGAACAAATTTGCCATCAAAAAGTAAGAGTTGGGGCTAGAAAGA
GGATTTAATGGTCTCATGCTCTTGCTGGGCATGTAAGAAGACTGGAGCTC
CGATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_k21.b1 MSMg01no079_k21.b1 CHROMAT_FILE:
MSMg01no079_k21.b1 PHD_FILE: MSMg01no079_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:22 2005
         (405 letters)



>mm_chr14_27707392_27708196
          Length = 805

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttcatggccaacaatcagcaaatactttctatttcccaacgaagacgaaat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttcatggtcaacaatcagcaaatactttctatttcccaacgaagacgaaat 264

                                                                       
Query: 65  cttttaaatttgatgaacctagccatgaagaaaagaggtcatatttccaaacccacatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttttaaatttgatgaacctagccatgaagaaaagaggtcatatttccaaacccacatgt 324

                                                                       
Query: 125 gaaaaacaaggagaacatgccagactgtcttatgatcaagtatttatagtaaagctattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaacaaggagaacatgccagactgtcttatgatcaagtatttatagtaaagctattt 384

                                                                       
Query: 185 ataatggtcaccagaggagagtggagagccagataaccctgcaacatggaaacttcagag 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatggtcaccggaggagagtggagagccagataaccctgcaacatggaaacttcagag 444

                                                                       
Query: 245 cagccctagaggatatgaaaaaggtaaaaattagtctttggagcctattctatatcaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagccctagaggatatgaaaaaggtaaaaattagtctttggagcctattctatatcaaaa 504

                                                                       
Query: 305 cggtaatgtactttataaatcatttagatttgcctaatacactggctgttttaactgctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cggtaatgtactttataaatcatttagatttgcctaatacactggctgttttaactgctg 564

                                                    
Query: 365 ctgtccctattctgtgtagtataattcaccccatagcatgg 405
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtccctattctgtgtagtataattcaccccatagcatgg 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no079_k21.g1 MSMg01no079_k21.g1 CHROMAT_FILE:
MSMg01no079_k21.g1 PHD_FILE: MSMg01no079_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:22 2005
         (463 letters)



>mm_chr14_27856188_27857050
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggattggacttttatcagggacctaaattttaaccagctggaaccctcaacccccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttggattggacttttatcagggacctaaattttaaccagctggaaccctcaacccccaca 526

                                                                       
Query: 61  ccccaataccaccctgttcttctctacctttggagatgaagtatttgccttaaatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccccaataccaccctgttcttctctacctttggagatgaagtatttgccttaaatgggaa 466

                                                                       
Query: 121 acttgtagttcactgtaaagacagtgccagcatagtttccaaatggctggagacactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acttgtagttcactgtaaagacagtgccagcatagtttccaaatggctggagacactctt 406

                                                                       
Query: 181 ttgggggaagacgtttagaaatggtagttcagacacaatagaccaggaaatacgtacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttgggggaagacgtttagaaatggtagttcagacacaatagaccaggaaatacgtacccc 346

                                                                       
Query: 241 acctagggtaggagacaagaaacagctcacaggaaaaactactaaacagaagatggattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acctagggtaggagacaagaaacagctcacaggaaaaactactaaacagaagatggattt 286

                                                                       
Query: 301 tttttttttagttttttagttggtttgttaacttgcctgcttgctttttaagatagggtg 360
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 285 tttttttttaggtttttagttggtttgttcacttgcctgcttgctttttaagataggatg 226

                                                                       
Query: 361 tcattatgtaatcattcatgttagcctttaactcttgatcttcctgctctgcctcccaag 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcatcatgtaatcattcatgttagcctttaactcttgatcttcctgctctgcctcccaag 166

                                                      
Query: 421 tgtttaggggtatggacaacatgcctggctttggaattccttc 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgtttaggggtatggacaacatgcctggctttggaattccttc 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)