BAC Information

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BAC

Clone NameMSMg01-079N08
Chromosome14 (Build37)
Map Location 117,745,796 - 117,875,582
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079N08.T7 (MSMg01no079_n08.b1)MSMg01-079N08.TJ (MSMg01no079_n08.g1)
ACCAG300820AG300821
length708706
length of high quality
(start - end)		581 (42 - 622)552 (70 - 621)
definitionCHROMAT_FILE: MSMg01no079_n08.b1 PHD_FILE: MSMg01no079_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:34 2005CHROMAT_FILE: MSMg01no079_n08.g1 PHD_FILE: MSMg01no079_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,875,006 - 117,875,582)(117,745,796 - 117,746,346)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATATAAATTACCAATCAGTCTGAAAAGCTGCCTTATTTATGTCTTTTCT
CGCTTCTTATCTGGAAAATCCGAACTACATTAATCAAAATATAAATGCAG
CGAAAATGAAATGCAAAGCCATCTTCATTAATAAGCCAGAGAAAATTCAG
AGCACAAGAGTAACAAGAAATAACATTTGGGTGCCACACCACTTCCAGGT
CTCAAGGAGGTCTCCTGTAGACTGTCAGGTGGTTTTGCTCTGGTGATCTG
AAGCTCTGGGAACAATATCAAGGCAGAGAGAAGAGAACGTGGTCATGCAG
CTGGGCATTCAGACTGCTCACCTTGGAGGCAAGGATGAACTCAAACCCAT
ATTCTTACAAGGACTTTTTTTGCCTTTCTGTGACTAGTTTATTTACTTCA
GTCACCTGTCGTGTCTTATCCATGCTGTCATAAATTGCTGGAATTAATTA
TTTTTAACATGAATTAGAAGTGTTTATTGAATTATGCAGATGTACCTCAT
TATCTTTTTAGAGCTATGTTGAGAATTTCATATGAAAATTGCACTTGCAT
CATTTTACTCTTCTTTCTCTCACACCAACTACTCTTGTGTACTTCACAAC
TCCCTCTTAAACACACACATACCCACACCCTTTAGTGATGTTAGAATGTA
CATGTGTT

TGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATTTGGAGTCATTAAAATTGCTTTGAATT
TTCACTCTGTGTGTTGACAATTAAAGCCTGTTCACAGGATCTCACAAGTG
GGAGCAATTACTGAGTTATTGTTTTACAATGAAGCCAGCATATCCTTCAA
AGCTACGAATGTGTCAGGATGAGGGAGCCAGGACAGCGTGATGACAGATT
AATTTGGTCTCCCATTGTCTAGCTGAGTAAATTTAAAATTTTTTCATACT
TTTAAGGAAGTAGAATTCACTGCATCCCTGAACTACATAAAAACATAGAG
CTTTGAATTTGGTAAAACTATTTTCATATTTTATGGTCGCATATACCTGC
AATCCCAGCACTCAGGAGGCAGAGGTAGGCAGATCTCTGAGACTGAGGCC
AGCCTGGTCTTCAGGGTGAGCTCTGGGACAGCCAAAGCTATACAGAGAAA
CCCTGTATCCAAAAAAGAAAATAATAATAATAATAATAACAATAATAATA
AATATTAATAATATTTTCACTACCAATCAAAACAAAATTTTACTTTAATT
TTATTTTAATTTTCTTTTAACGTCTCATTTGAATAATTTCAAGGTAGACA
TTGCCCATTCAAAAGCAAACCAATTGTTCAGGATAGCACTGCCAAATGAT
GAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_n08.b1 MSMg01no079_n08.b1 CHROMAT_FILE:
MSMg01no079_n08.b1 PHD_FILE: MSMg01no079_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:34 2005
         (581 letters)



>mm_chr14_117874802_117875782
          Length = 981

 Score = 1077 bits (557), Expect = 0.0
 Identities = 572/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatataaattaccaatcagtctgaaaagctgccttatttatgtcttttctcgctt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattcatataaattagcaatcagtctgaaaagctgccttatttatgtcttttctcgctt 722

                                                                       
Query: 65  cttatctggaaaatccgaactacattaatcaaaatataaatgcagcgaaaatgaaatgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cttatctggaaaatccgaactacattaatcaaaatataaatgcagcgaaaatgaaatgca 662

                                                                       
Query: 125 aagccatcttcattaataagccagagaaaattcagagcacaagagtaacaagaaataaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagccatcttcattaataagccagagaaaattcagagcacaagagtaacaagaaataaca 602

                                                                       
Query: 185 tttgggtgccacaccacttccaggtctcaaggaggtctcctgtagactgtcaggtggttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttgggtgccacaccacttccaggtctcaaggaggtctcctgtagactgtcaggtggttt 542

                                                                       
Query: 245 tgctctggtgatctgaagctctgggaacaatatcaaggcagagagaagagaacgtggtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgctctggtgatctgaagctctgggaacaatatcaaggcagagagaagagaacgtggtca 482

                                                                       
Query: 305 tgcagctgggcattcagactgctcaccttggaggcaaggatgaactcaaacccatattct 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 481 tgcagctgggcattcagactgctcaccttggaggcaaggatgaactcaaacctatattct 422

                                                                       
Query: 365 tacaaggactttttttgcctttctgtgactagtttatttacttcagtcacctgtcgtgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaaggactttttttgcctttctgtgactagtttatttacttcagtcacctgtcgtgtc 362

                                                                       
Query: 425 ttatccatgctgtcataaattgctggaattaattatttttaacatgaattagaagtgttt 484
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 361 ttatccatgctgtcataaattgctggaattaattatttttaatatggattagaagtgttt 302

                                                                       
Query: 485 attgaattatgcagatgtacctcattatctttttagagctatgttgagaatttcatatga 544
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 attgaattatgcagatgtacctcattatctttttagagttatgttgagaatttcatatga 242

                                                
Query: 545 aaattgcacttgcatcattttactcttctttctctca 581
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaattgcacttgcatcattttactcttctttctctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_n08.g1 MSMg01no079_n08.g1 CHROMAT_FILE:
MSMg01no079_n08.g1 PHD_FILE: MSMg01no079_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:34 2005
         (552 letters)



>mm_chr14_117745596_117746547
          Length = 952

 Score = 1027 bits (531), Expect = 0.0
 Identities = 546/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttggagtcattaaaattgctttgaattttcactctgtgtgttgacaattaaagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatttggagtcattaaaattgctttgaattttcactctgtgtgttgacaattaaagcct 260

                                                                       
Query: 61  gttcacaggatctcacaagtgggagcaattactgagttattgttttacaatgaagccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcacaggatctcacaagtgggagcaattactgagttattgttttacaatgaagccagc 320

                                                                       
Query: 121 atatccttcaaagctacgaatgtgtcaggatgagggagccaggacagcgtgatgacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatccttcaaagctacgaatgtgtcaggatgagggagccaggacagcgtgatgacagat 380

                                                                       
Query: 181 taatttggtctcccattgtctagctgagtaaatttaaaattttttcatacttttaaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttggtctcccattgtctagctgagtaaatttaaaattttttcatacttttaaggaa 440

                                                                       
Query: 241 gtagaattcactgcatccctgaactacataaaaacatagagctttgaatttggtaaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaattcactgcatccctgaactacataaaaacatagagctttgaatttggtaaaact 500

                                                                       
Query: 301 attttcatattttatggtcgcatatacctgcaatcccagcactcaggaggcagaggtagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttcatattttatggtcgcatatacctgcaatcccagcactcaggaggcagaggtagg 560

                                                                       
Query: 361 cagatctctgagactgaggccagcctggtcttcagggtgagctctgggacagccaaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatctctgagactgaggccagcctggtcttcagggtgagctctgggacagccaaagct 620

                                                                       
Query: 421 atacagagaaaccctgtatccaaaaaagaaaataataataataataataacaataataat 480
           |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 621 atacagagaaaccctgtatccaaacaataaaataataataataataataataataataat 680

                                                                       
Query: 481 aaatattaataatattttcactaccaatcaaaacaaaattttactttaattttattttaa 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatattaataatattttcactacaaatcaaaacaaaattttactttaattttattttaa 740

                      
Query: 541 ttttcttttaa 551
           |||| ||||||
Sbjct: 741 ttttattttaa 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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