BAC Information

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BAC

Clone NameMSMg01-079O17
Chromosome14 (Build37)
Map Location 48,559,300 - 48,559,727
singlet/doubletsinglet
Overlap gene4930447J18Rik
Upstream geneSamd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
Downstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079O17.T7 (MSMg01no079_o17.b1)MSMg01-079O17.TJ (MSMg01no079_o17.g1)
ACCAG300886AG300887
length711704
length of high quality
(start - end)
320 (43 - 362)428 (71 - 498)
definitionCHROMAT_FILE: MSMg01no079_o17.b1 PHD_FILE: MSMg01no079_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:40 2005CHROMAT_FILE: MSMg01no079_o17.g1 PHD_FILE: MSMg01no079_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCTGCCCCCTCAATGCTGGGATTAAAGGTGTGTGACACTGAGTCCCC
TGCACGGCGTGTTCTGAGTGTGAGAAATAAAACCCGGAGCTGTGCACATG
TCAGGCAAGTATACCATCCCTGAGATACTGCTTAGCCCTTCTGTTGAAGG
TCTTATGTTTAAATACCTTGTATCCATTTTGTTGGTTCTGTAAATGCTGT
AAGATGAAGACCCAATTTCATTTCTTTGTGTGTGGACTTATAACTGATCC
AATGCCATTTGTTTATTAAATAATCCTTGGCTTTTGCCTGTCTTGGTACA
TTTGTCAAATATTATTTGACCATATGCATTATGTATTCTTGTGTTTTCAG
TTGCTATAACAAAAGATCTGAGACTGGATAATTTGGATAGAGGAGAGAAG
GGGGAGATGAACGGAAGAAGGTTATAGTATTTTTTGTTACATTCCTTTTT
TCTTCTTTTAGAACATTTCATTTTTTTTTTCTTTTTCTTTTTTTATTCAT
TCCCACCCCACACCTTTTTTATTTTCTCCTATTTTTCCCATTCTTATTTA
CTCATTTTTAATATTTTTTTACTCAATATCCTTCCCCCTACTTTTCTATT
TTTTTTTTTTTTCTCAATACTTATACCCCTTTTTTTTTTCTTCATCTTTC
TTCCCCTCCTC
AGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGGACAGCCAGAGCTTCACAGAGAAATCC
TGTCTGGATAAAAGAAAAAAAGAGGGTCTGTGTTGGATAAGGGAAAACAC
CTTGACCCCGACTTGACCCCAAGACCAGAGCAAAGGAAAGATCACCCTGA
CTCTGGCTTGACCCCAAGACCAAGACCAGGACCAAGAAACAGAATCTCAC
TAATCCCGGAGCTTGACACAGAAACCCATCAATCCCCAAACAGGAAAACC
CACCACTCCCTGCAGTTGCCCATGCTCAGGAATTGAAATTCCACCAATCC
TCATCCTGTAAATCCCTACCCTGAGAAGCTCCACCCCGAAGAAATCACAA
ACAACCCAGCTTTCTGCTCAGTGTCCTTCTGCTTCTGGCTTCACAAAGAC
AGCCACCCTCCTGGGGTTTTCCCTCTCAATAAAGCTTTTTGAGATTTGTT
GTGAGATGCGACTTTGTGGAATTCCTTGGCTCCAGATTGCCAGGATACCT
CGAGCAGCAGAGCTGTAAACTCTTTGGCTGGGGAAACCATCCCTTGCTGA
AGCTTGTACACTGTGTTGGGGGAGTATCTCCTGCAGCAGCTGGAGCAGAG
CATTATCACTCCTGTAGGGAAGCCTTGCCCTTCACAGCCTTTACAGTTTG
GTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_o17.g1 MSMg01no079_o17.g1 CHROMAT_FILE:
MSMg01no079_o17.g1 PHD_FILE: MSMg01no079_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:40 2005
         (428 letters)



>mm_chr14_48559100_48559927
          Length = 828

 Score =  828 bits (428), Expect = 0.0
 Identities = 428/428 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggacagccagagcttcacagagaaatcctgtctggataaaagaaaaaaagagggtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggacagccagagcttcacagagaaatcctgtctggataaaagaaaaaaagagggtctg 260

                                                                       
Query: 61  tgttggataagggaaaacaccttgaccccgacttgaccccaagaccagagcaaaggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttggataagggaaaacaccttgaccccgacttgaccccaagaccagagcaaaggaaag 320

                                                                       
Query: 121 atcaccctgactctggcttgaccccaagaccaagaccaggaccaagaaacagaatctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaccctgactctggcttgaccccaagaccaagaccaggaccaagaaacagaatctcac 380

                                                                       
Query: 181 taatcccggagcttgacacagaaacccatcaatccccaaacaggaaaacccaccactccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatcccggagcttgacacagaaacccatcaatccccaaacaggaaaacccaccactccc 440

                                                                       
Query: 241 tgcagttgcccatgctcaggaattgaaattccaccaatcctcatcctgtaaatccctacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagttgcccatgctcaggaattgaaattccaccaatcctcatcctgtaaatccctacc 500

                                                                       
Query: 301 ctgagaagctccaccccgaagaaatcacaaacaacccagctttctgctcagtgtccttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagaagctccaccccgaagaaatcacaaacaacccagctttctgctcagtgtccttct 560

                                                                       
Query: 361 gcttctggcttcacaaagacagccaccctcctggggttttccctctcaataaagcttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttctggcttcacaaagacagccaccctcctggggttttccctctcaataaagcttttt 620

                   
Query: 421 gagatttg 428
           ||||||||
Sbjct: 621 gagatttg 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)