BAC Information

Click to search

BAC

Clone NameMSMg01-080I09
Chromosome14 (Build37)
Map Location 97,421,425 - 97,421,942
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080I09.T7 (MSMg01no080_i09.b1)MSMg01-080I09.TJ (MSMg01no080_i09.g1)
ACCAG301339AG301340
length679675
length of high quality
(start - end)
575 (48 - 622)441 (76 - 516)
definitionCHROMAT_FILE: MSMg01no080_i09.b1 PHD_FILE: MSMg01no080_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:27 2005CHROMAT_FILE: MSMg01no080_i09.g1 PHD_FILE: MSMg01no080_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTTTCCAATAGCTGAGTTGTTATCCACTGTGTAAATGTAT
CACGTGTTCTGTACCCATTCCTCTGTTGAAGGACATCTGGGTCAGCTATT
ATTTATAATAGCTCCTGGTTATTATAATTAAGGCTGCTACGAACATAGAA
GAGCTTGTGTCCTTGTTATATGTTGGACCATCTTTTGGGTATATGCCTAG
GAGTGGCATAGCTACTACTCAGGTAGTACTATGTCTAATTTTCTGAGCAA
CTGCACATAGGCACAATAATAGCCTTTAAAGACAGGAAATAATCTCAAAT
AAACTGCTGAAATTAAAATTCAGTGGGACTTGAATTGTGCTTATGACTAA
TAAATAGAATCAAGTGCCCAAAGAATGGAAATAAAGCAGTAATCATCAAA
ATATACTTGAAGGAAGATATAGCAAAAAATAGATGATATTTCTTAGCATC
TATTATAGTTTTGAATTCTTTGATAAAATTTCCAAGAGATTTCTGCATTA
AATTTCTAAGAGAAAAATTTTAGTAGATATTAGGATAGCTGTGAGGGAAC
ACATTTGTATATGTGATTGGTAGATCAAGGATGAAAATATGACTCGGCTG
GAGAAACTTTTGACTTCCAAGGATCTACT
CACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACCTGAGGAATACCGAATGGCAG
AGAAGCACTTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGAAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTTCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGCGGTACATCTACTCAATAGAGTACTACTCAGCTATGAAACAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
TTGAGGCAACACATTCTTAAAGGAACTCACAAAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_i09.b1 MSMg01no080_i09.b1 CHROMAT_FILE:
MSMg01no080_i09.b1 PHD_FILE: MSMg01no080_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:27 2005
         (575 letters)



>mm_chr14_97420968_97421942
          Length = 975

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  tgttctgtacccattcctctgttgaaggacatctgggtcagctattatttataatagctc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tgttctgtacccattcctctgttgaaggacatctgggtcagctattatttataatagctc 916

                                                                       
Query: 118 ctggttattataattaaggctgctacgaacatagaagagcttgtgtccttgttatatgtt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctggttattataattaaggctgctacgaacatagaagagcttgtgtccttgttatatgtt 856

                                                                       
Query: 178 ggaccatcttttgggtatatgcctaggagtggcatagctactactcaggtagtactatgt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ggaccatcttttgggtatatgcctaggagtggcatagctactactcaggtagtactatgt 796

                                                                       
Query: 238 ctaattttctgagcaactgcacataggcacaataatagcctttaaagacaggaaataatc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ctaattttctgagcaactgcacataggcacaataatagcctttaaagacaggaaataatc 736

                                                                       
Query: 298 tcaaataaactgctgaaattaaaattcagtgggacttgaattgtgcttatgactaataaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcaaataaactgctgaaattaaaattcagtgggacttgaattgtgcttatgactaataaa 676

                                                                       
Query: 358 tagaatcaagtgcccaaagaatggaaataaagcagtaatcatcaaaatatacttgaagga 417
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tagaatcaagtgtttaaagaatggaaataaagcagtaatcatcaaaatatacttgaagga 616

                                                                       
Query: 418 agatatagcaaaaaatagatgatatttcttagcatctattatagttttgaattctttgat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agatatagcaaaaaatagatgatatttcttagcatctattatagttttgaattctttgat 556

                                                                       
Query: 478 aaaatttccaagagatttctgcattaaatttctaagagaaaaattttagtagatattagg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaaatttccaagagatttctgcattaaatttctaagagaaaaattttagtagatattagg 496

                                                 
Query: 538 atagctgtgagggaacacatttgtatatgtgattggta 575
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atagctgtgagggaacacatttgtatatgtgattggta 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)