Query= MSMg01no080_p19.b1 MSMg01no080_p19.b1 CHROMAT_FILE:
MSMg01no080_p19.b1 PHD_FILE: MSMg01no080_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:03 2005
(509 letters)
>mm_chr14_47300724_47301633
Length = 910
Score = 932 bits (482), Expect = 0.0
Identities = 500/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Plus
Query: 6 gaattccttcgttatccgccttctctcc-taatgttccaccctttgtcctctaataaaaa 64
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttcgttagctgccttctctccataatgttccaccctttgtcctctaataaaaa 265
Query: 65 tgaacggagcttgtgtcttagaccttcaactacaatgcctgtctggctaacacgtttggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgaacggagcttgtgtcttagaccttcaactacaatgcctgtctggctaacacgtttggc 325
Query: 125 tagaggcattagtgttaccgaggcttaccgcttacccttcgcaggagcacggttggactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagaggcattagtgttaccgaggcttaccgcttacccttcgcaggagcacggttggactt 385
Query: 185 cagcagtggccgggcagatcctgtggaatgcctcggggaccctaccactgagagccttgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cagcagtggccgggcagatcctgtggaatgcctcggggaccctaccactgagagccttgc 445
Query: 245 cttgttgcagagaaggaagctgaagcccagggactggaagccaatggcctaccagacttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttgttgcagagaaggaagctgaagcccagggactggaagccaatggcctaccagacttc 505
Query: 305 gtgcagtcagtttatgtatctcttgctcctcatgctctcgctctctctgcatacaatgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgcagtcagtttatgtatctcttgctcctcatgctctcgctctctctgcatacaatgag 565
Query: 365 cagccttcgccatcctgaacatggggctagacctgtggttctcatcctgtgggtgacatc 424
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagcctttgtcatcctgaacatggggctagacctgtggttctcatcctgtgggtgacatc 625
Query: 425 cccttttggggggggggg-caaacaaccctttcacaggagttaaccctttcatgggggtc 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cccttttggggggggggggcaaacaaccctttcacaggagttaaccctttcatgggggtc 685
Query: 484 acatatcagatatttacattacgatt 509
||||||||||||||||||||||||||
Sbjct: 686 acatatcagatatttacattacgatt 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_p19.g1 MSMg01no080_p19.g1 CHROMAT_FILE:
MSMg01no080_p19.g1 PHD_FILE: MSMg01no080_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:03 2005
(569 letters)
>mm_chr14_47461836_47462804
Length = 969
Score = 1077 bits (557), Expect = 0.0
Identities = 566/569 (99%)
Strand = Plus / Minus
Query: 1 cagaccaatctgggtgaggtctccatcaaagaaacgaagaaagactgacttaggcaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cagaccaatctgggtgaggtctccatcaaagaaacgaagaaagactgacttaggcaatgc 528
Query: 61 gccatgctgcctgactggtttctgtcaggtgatagataagcttccagcagtcacaggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gccatgctgcctgactggtttctgtcaggtgatagataagcttccagcagtcacaggcag 468
Query: 121 catgccgacttcagaatggttcactgaagtcacagtgaatgtgacggaggaagaccatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 catgccgacttcagaatggttcactgaagtcacagtgaatgtgacggaggaagaccatca 408
Query: 181 gctccggaggtaagttcaataccttcagcccaaaacccccactggatttgattgtctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gctccggaggtaagttcaataccttcagcccaaaacccccactggatttgattgtctcct 348
Query: 241 ggaggtcaccagtgggatgcagaagtagcaatcagtgacttgaggatagacacctcagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggaggtcaccagtgggatgcagaagtagcaatcagtgacttgaggatagacacctcagta 288
Query: 301 gagggacacagggagatgtcagcatcacttggaagagtgaaaggcacagcaaacaaatat 360
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 287 gagggacacagggagatgtcagcatcacttggaagagtgaaagggagagcaaacaaatat 228
Query: 361 aaaaaaagggttctttttccattttcatgtatgtatgctgtgcatgtgtgcatatgtgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aaaaaaagggttctttttccattttcatgtatgtatgctgtgcatgtgtgcatatgtgtg 168
Query: 421 tgctgtgcatgtgtgtatgagtgtgtgttgtgcatgtgtgcatgagtgtgtgctgtgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tgctgtgcatgtgtgtatgagtgtgtgttgtgcatgtgtgcatgagtgtgtgctgtgcat 108
Query: 481 gtatgtgtgtgctgtgcatatgtgcatgagtgtgtgctgtgcatgtatgtgtgtgctgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gtatgtgtgtgctgtgcatatgtgcatgagtgtgtgctgtgcatgtatgtgtgtgctgtg 48
Query: 541 catatgcgcatgagtgtgtgctgtgcatg 569
|||||| ||||||||||||||||||||||
Sbjct: 47 catatgtgcatgagtgtgtgctgtgcatg 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
