BAC Information

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BAC

Clone NameMSMg01-082D20
Chromosome14 (Build37)
Map Location 65,007,996 - 65,008,240
singlet/doubletsinglet
Overlap geneMsra
Upstream geneBlk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082D20.T7 (MSMg01no082_d20.b1)MSMg01-082D20.TJ (MSMg01no082_d20.g1)
ACCAG302655AG302656
length691690
length of high quality
(start - end)
595 (44 - 638)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no082_d20.b1 PHD_FILE: MSMg01no082_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:40 2005CHROMAT_FILE: MSMg01no082_d20.g1 PHD_FILE: MSMg01no082_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGTTTACCGGGAGATCCTGTCTTAACATAAGATAAAGAACTTGTT
TATTTGATTAAAAAATAAAAAACAATTATTTATTTATTTATTAATTAATT
ATGTATACAATGTTCTGCCTGCACAGACAGAAGAGGGCACCAGATCCCAT
TACAGATGGTTGTGAGCCACTTTGTGATTATTGGGATTTGAACTCAGGAC
CTTTGGAAGAGCAGCCAGTGCTCTTAAACTCTGAGCCATCACTCCAGCCT
AGAGTTTATTTATTTATTTTTAGTTGAATATAAAATTGAGAAGGGGCTGG
AGAGATGACCCAGCAGGTAAAAGCACCTGTTGTTCTTACACAGGACCCAG
ATTCAGTTCCTAACACCCACATCGCAGTTAACAGTCTGTGACTCCAGATA
CAGAGGACCTGATCCCTCTTTTGGCCTCTGCAGACCCTGTACACAGGTGG
TACACAGATATCCACGCAGGCAAAACACCCATACACATAAAATACAAATA
GGTAAGTCTAAAACATAGTAACAATTGAGAAAGTACATCTACCTTTGGTT
TCTGCAAATATATGGATACATAGTCATATGTGCCTGCGCCTCACCCCCCA
CACCCCTATGCAGAAATGAGATATGCACATGTATACACAGA
ATGATGTGGGAGGCCTGGCGGCCGCCTGTTCGCACGTGGAGGTGACCTAT
AGAAGTTGCGAAAAAATTCCATGACACTCAATCCCAACCACAGAGCAGAG
AGAGGGAAGCATGAACACAGGCAAAGGGCAGCTCAGAGAGCTCCAACTCG
GGTTATTCTAAGACAGATCTGAAGAGGCAGGTGACTAGATAAGAAGGTGC
ATTTATATAAAAGCCTACCTCAGAGCATCACCTCTGTGAGAGCTGGCTTT
GCTCCATGCTCCAGCACATCCCTTCACATAAGCCATCGAGCTCTAAGCCC
TTCACATAAGCCTTGGTGCTTGAAGCTGAGCACCAGCACTGTGATGTCTG
GAATCTTTCCATCTACGGGCTGTTGAAGCTCAGGTGTGGACAGGCTCAGA
GGTGATGGAGTGAGCAACACAGATGATGCGTGGTGGAGTCCAAGTTTGAC
CTTACATATGTCAGAGGGAAATGCTTGAGACTTAGTTGTGATTTCACCAT
GGCCCCGACATCACGACATTCAGGCAAGACTAGGATCAAGACCATCTGAT
GGGCACCCCTGTGGGACCTCCTCTTTCTAATTATCAGTCCTAGAGAGTAG
TCATGAGGATTCAATGCACCACAATGCACAGTGCCCATGCTCCATCAACA
ATGATTCCCAGCTTCCAACCACCCTTACTAATGGTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_d20.g1 MSMg01no082_d20.g1 CHROMAT_FILE:
MSMg01no082_d20.g1 PHD_FILE: MSMg01no082_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:40 2005
         (249 letters)



>mm_chr14_65007796_65008444
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatgacactcaatcccaaccacagagcagagagagggaagcatgaacacaggcaaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tccatgacactcaatcccaaccacagagcagagagagggaagcatgaacataggcaaagg 260

                                                                       
Query: 61  gcagctcagagagctccaactcgggttattctaagacagatctgaagaggcaggtgacta 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagctcagagagctccaacacgggttattctaagacagatctgaagaggcaggtgacta 320

                                                                       
Query: 121 gataagaaggtgcatttatataaaagcctacctcagagcatcacctctgtgagagctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataagaaggtgcatttatataaaagcctacctcagagcatcacctctgtgagagctggc 380

                                                                       
Query: 181 tttgctccatgctccagcacatcccttcacataagccatcgagctctaagcccttcacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgctccatgctccagcacatcccttcacataagccatcgagctctaagcccttcacat 440

                
Query: 241 aagcc 245
           |||||
Sbjct: 441 aagcc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)