BAC Information

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BAC

Clone NameMSMg01-083G22
Chromosome14 (Build37)
Map Location 97,421,470 - 97,421,942
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083G22.T7 (MSMg01no083_g22.b1)MSMg01-083G22.TJ (MSMg01no083_g22.g1)
ACCAG303557AG303558
length717719
length of high quality
(start - end)
538 (30 - 567)614 (67 - 680)
definitionCHROMAT_FILE: MSMg01no083_g22.b1 PHD_FILE: MSMg01no083_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:09 2005CHROMAT_FILE: MSMg01no083_g22.g1 PHD_FILE: MSMg01no083_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTATACGACTCCTATTCCCAGAGGATCCGCGGAATTCATT
GTTTTTCATAGCTGAGTTGTTATCCACTGTGTAAATGTATCACGTGTTCT
GTACCCATTCCTCTGTTGAAGGACATCTGGGTCAGCTATTATTTATAATA
GCTCCTGGTTATTATAATTAAGGCTGCTACGAACATAGAAGAGCTTGTGT
CCTTGTTATATGTTGGACCATCTTTTGGGTATATGCCTAGGAGTGGCATA
GCTACTACTCAGGTAGTACTATGTCTAATTTTCTGAGCAACTGCACATAG
GCACAATAATAGCCTTTAAAGACAGGAAATAATCTCAAATAAACTGCTGA
AATTAAAATTCAGTGGGACTTGAATTGTGCTTATGACTAATAAATAGAAT
CAAGTGCCCAAAGAATGGAAATAAAGCAGTAATCATCAAAATATACTTGA
AGGAAGATATAGCAAAAAATAGATGATATTTCTTAGCATCTATTATAGTT
TTGAATTCTTTGATAAAATTTCCAAGAGATTTCTGCATTAAATTTCTAAG
AGAAAAATTTTAGTAGATATTAGTATAGCTGTGAGGTAACACATTTGTAT
ATGTGATTGGTATATCAAGGATGAAACTATGACTTGGCTTTATATTTTTT
TTACTTCCCTGGATCTATCGTGATGTATTCTGCCCTGTTTTTTGGCATCT
TGTTTTACCATATTCTT
AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACACCTGAGGAATACCGAATGGCAGAGAAGCACT
TGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTC
CATTTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGAATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTTCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATAGAGTACTACTCAGCTATGAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCTTAAAGGAACTCACAAAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACAC
ATGAAGCTCAAGATAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_g22.b1 MSMg01no083_g22.b1 CHROMAT_FILE:
MSMg01no083_g22.b1 PHD_FILE: MSMg01no083_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:09 2005
         (538 letters)



>mm_chr14_97421005_97421942
          Length = 938

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 66  tgttctgtacccattcctctgttgaaggacatctgggtcagctattatttataatagctc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 tgttctgtacccattcctctgttgaaggacatctgggtcagctattatttataatagctc 879

                                                                       
Query: 126 ctggttattataattaaggctgctacgaacatagaagagcttgtgtccttgttatatgtt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ctggttattataattaaggctgctacgaacatagaagagcttgtgtccttgttatatgtt 819

                                                                       
Query: 186 ggaccatcttttgggtatatgcctaggagtggcatagctactactcaggtagtactatgt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggaccatcttttgggtatatgcctaggagtggcatagctactactcaggtagtactatgt 759

                                                                       
Query: 246 ctaattttctgagcaactgcacataggcacaataatagcctttaaagacaggaaataatc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctaattttctgagcaactgcacataggcacaataatagcctttaaagacaggaaataatc 699

                                                                       
Query: 306 tcaaataaactgctgaaattaaaattcagtgggacttgaattgtgcttatgactaataaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tcaaataaactgctgaaattaaaattcagtgggacttgaattgtgcttatgactaataaa 639

                                                                       
Query: 366 tagaatcaagtgcccaaagaatggaaataaagcagtaatcatcaaaatatacttgaagga 425
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tagaatcaagtgtttaaagaatggaaataaagcagtaatcatcaaaatatacttgaagga 579

                                                                       
Query: 426 agatatagcaaaaaatagatgatatttcttagcatctattatagttttgaattctttgat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agatatagcaaaaaatagatgatatttcttagcatctattatagttttgaattctttgat 519

                                                                
Query: 486 aaaatttccaagagatttctgcattaaatttctaagagaaaaattttagtaga 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaaatttccaagagatttctgcattaaatttctaagagaaaaattttagtaga 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)