BAC Information

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BAC

Clone NameMSMg01-083N12
Chromosome14 (Build37)
Map Location 102,874,459 - 103,012,497
singlet/doubletdoublet
Overlap geneLOC669278
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N12.T7 (MSMg01no083_n12.b1)MSMg01-083N12.TJ (MSMg01no083_n12.g1)
ACCAG303856AG303857
length742751
length of high quality
(start - end)
266 (67 - 332)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no083_n12.b1 PHD_FILE: MSMg01no083_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:41 2005CHROMAT_FILE: MSMg01no083_n12.g1 PHD_FILE: MSMg01no083_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,874,459 - 102,874,724)(103,012,208 - 103,012,497)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGAGTTGAACTGTAGCCATTTCCTACAGAATCATGGCACAGATGATTC
TGCATTTGTGCTCACACACGTTACAAGTTTGATTGACATTCCATTTCCCA
ATATCATCATCTAATCGTTATCTTGAATGTCAGTCATGAGCAGCAACAAA
CAGAAGCTAACACATGTCAGGAGAAGCTTTACAAATCAGCCCGCGGCCCC
ATTTCTAGACTAGACATCCTAAGAGCTGCCTTTCTCTTCCTACTTCTCAA
ATGCTTTCAGTAATTAACATTTTTATAGCTTTCTAGTGTCACCATTTTTT
CTCACTGTTCATATTTAATTCCATAATGCCCATAATCAACCTCATAAGAA
TGTATATTTTCCCCTTTAGAGCCTCATGAAAGTGATTAATAATTCATTGA
ATATTTGTCTCGTTCTTTATGTATTATTTCTCTATTTGTGTACTGTATTA
TGTATACTGTTATGCTATTACTTAACAATTCCTATATGTTCTTCACAATC
AATAATTTTATCTAATATAGTTTCTCATATAATCTATTATCAATTCTAAT
TGTTATCAGTGAAATATTATTATTACTCCCAAATAGTTTTTCGCTGTTTC
ATTCTTATTTTTACTTATTTTTTTCTATTTTATTTTTTTTTTCTTCACTT
TTTTTTTTCTTCATCCTCTTTTTCCTCTTATCTATTTCTCTC
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAAGGTTGGCCTAGGTGACATTCCTTG
TACCATCCAATGAAACACTGCCTTAAGAAACTGTCATCCAGCTGGCATCC
ATGGTGACACCTAGCAAAACCTTGCAGTGCTCCAGCATGGAGCCAGAATG
CCTGGAATAGAGGTGATGGTGACAAGGTAATGAGCAAAGTCTTCTACACT
GAATGTTAAGTAGTCTGGCTAATATTTTCTAAGTTTGTTGGGGTTTAACA
GATAAGATTGCTAATGCCATGTTTCATACTCTCTCTCTCTTCCTGACCTC
TGCTGATTCCAGTGAAGTAGACATTGTTTCGGAAGAAAGGAAATCTCTTC
CTATATTTAACTCTGTTAAGATTTATATGCTTATAGATTTCACACCTCTT
TTGCTTTTTCGTCACTTTATCCTAACCTTCNTCCTCCGCTCCCTCACCAC
CACCCCATCTTCACCATATTACAATACACAGCTATTACGTTCATTAACGT
AACTAAAACGCTACGTTTTAATTCTTTCACCATACCTTTTGATCTTATGT
ATCTACCTTTTCTTTTTTTTATGTATTTATCTTTATATTTATCGACCTTT
TTTATTTTTACTTAATTTATTAACATTTTAACTCTTTATATAAACAGATA
TTAATTACATTCTCAATCCTGTGGATTTCTCACCCTCACCCTATATCCTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n12.b1 MSMg01no083_n12.b1 CHROMAT_FILE:
MSMg01no083_n12.b1 PHD_FILE: MSMg01no083_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:41 2005
         (266 letters)



>mm_chr14_102874259_102874924
          Length = 666

 Score =  468 bits (242), Expect = e-136
 Identities = 260/266 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccatttcctacagaatcatggcacagatgattctgcatttgtgctcacacacgttacaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gccatttcctacagaatcatggcacagatgattctgcatttgtcctcacacacgttacaa 260

                                                                       
Query: 61  gtttgattgacattccatttcccaatatcatcatctaatcgttatcttgaatgtcagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgattgacattccatttcccaatatcatcatctaatcgttatcttgaatgtcagtca 320

                                                                       
Query: 121 tgagcagcaacaaacagaagctaacacatgtcaggagaagctttacaaatcagcccgcgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgagcagcaacaaacagaagctaacacatgtcaggagaagctttacaaatcagcccgccg 380

                                                                       
Query: 181 ccccatttctagactagacatcctaagagctgcctttctcttcctacttctcaaatgctt 240
            ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 acccatttttagacaagacatcctaagagctgcctttctcttcctacttctcaaatactt 440

                                     
Query: 241 tcagtaattaacatttttatagcttt 266
           ||||||||||||||||||||||||||
Sbjct: 441 tcagtaattaacatttttatagcttt 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no083_n12.g1 MSMg01no083_n12.g1 CHROMAT_FILE:
MSMg01no083_n12.g1 PHD_FILE: MSMg01no083_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:42 2005
         (290 letters)



>mm_chr14_103012008_103012697
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaggttggcctaggtgacattccttgtaccatccaatgaaacactgccttaagaaac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 490 attaaggttggcctaggtgacattccttgtaccatccaaagaaacactgccttaagaaac 431

                                                                       
Query: 61  tgtcatccagctggcatccatggtgacacctagcaaaaccttgcagtgctccagcatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgtcatccagctggcatccatggtgacacctagcaaaaccttgcagtgctccagcatgga 371

                                                                       
Query: 121 gccagaatgcctggaatagaggtgatggtgacaaggtaatgagcaaagtcttctacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gccagaatgcctggaatagaggtgatggtgacaaggtaatgagcaaagtcttctacactg 311

                                                                       
Query: 181 aatgttaagtagtctggctaatattttctaagtttgttggggtttaacagataagattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aatgttaagtagtctggctaatattttctaagtttgttggggtttaacagataagattgc 251

                                                             
Query: 241 taatgccatgtttcatactctctctctcttcctgacctctgctgattcca 290
           |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 taatgccatggttcagactctctctctcttcctgacctctgctgattcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)