BAC Information

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BAC

Clone NameMSMg01-084C10
Chromosome14 (Build37)
Map Location 11,752,219 - 11,752,676
singlet/doubletsinglet
Overlap geneFhit
Upstream genenone
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084C10.T7 (MSMg01no084_c10.b1)MSMg01-084C10.TJ (MSMg01no084_c10.g1)
ACCAG304087AG304088
length708701
length of high quality
(start - end)
522 (42 - 563)436 (73 - 508)
definitionCHROMAT_FILE: MSMg01no084_c10.b1 PHD_FILE: MSMg01no084_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:06 2005CHROMAT_FILE: MSMg01no084_c10.g1 PHD_FILE: MSMg01no084_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACAGGTCTTCACAATAGAAAAATGTGACATTTCTGTTGCACTTCTCAGT
GACATGGCTACTGACACCCTGCAGAAAAAGACTAAAAAAAAAAAAGCTAC
ACTATTTACCATCTGTTTTAGAGAAAATTCTATAACAAGTTGATGTTTTA
AACCTAGTCTAAAGTCTTTAATGTGGAAAAGTTACATTAGCAAGTCTTTT
GTAGCAAGAAGCTTCATCAACCAAGGTGGCATCTTGACACTAGAAAGAGA
CAATAATTAACATCAAGCCCCAATGTCCCAAAAATAATAACATCATCTGA
AACATGCAAAGTTCTGGCATGACTTCAGCTCTTACAAAAAGTGTTTCCAT
ATTCTTGACAACAAAGCATTCCTGTACTTGATAATAAGTAGATGATAATA
TGATGGTTGTGTTTGTTAGACTTACAATGATCTTAAAACTTTAACAAAGC
AAAATATTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCC
AATGCTATACCAAAAGTCCCCCTTACCTACCCATTTTTTTTCCCCTATTC
ACTTTTTTCCCCTTTTTTGACCCCGCCTTTTACCTGATCTGTCTAACATT
AACGTTTGCTTGTTTTTTCGCCCCCCCTCTTTTTTCAGATACCCCTTATT
CCTCCTCC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGCTACCTATTCAGTAACAT
TCAAATTTACTTCTAGTAGAGACAATGAAACTAATTAGGCATTACAAAGA
ACAGAGCTAGAAAAGCTCAAGGCTAGTCTGCATAGCAATCACTTAGAACA
ATTAACCGAGTCACCCCCAAACACAGGAATACATAATGGCCTAGGAAACA
GGTGGATTGTGGAAAGGGCTAGTGGAAGGGAATTCCTCTGGTGCAGGTTT
CTTCACTAGGCCCAGAGGAATAGCATAATGTGGTATTTACTAAAGAACCC
CTGGTGGTGGATTTAACAATAGACTAGCATTGCATCAGAACATTCACCTG
GCTCCTGTGTTTATCTGATCTTTTTAATTAAGGGTTGTTTCTATTCTTAG
TGATAAATGTGGCCTGGCTCCTGCCATCTTTTTATGTATGCATTCTTTTT
GCTTTGCGTCAATGTAACTTAGTGGATGTGTTGGTCTGGCTTTCTTGTTT
TTCTTCTGTATTAAAAGCCTGGAGTTCATTTGGACCACATACATTCAGAT
TCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTTTTCCTCCCCCCTCTTCATCTTCTTCCGTCTAATTTATTCTCAC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_c10.b1 MSMg01no084_c10.b1 CHROMAT_FILE:
MSMg01no084_c10.b1 PHD_FILE: MSMg01no084_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:06 2005
         (522 letters)



>mm_chr14_11752015_11752930
          Length = 916

 Score =  847 bits (438), Expect = 0.0
 Identities = 455/464 (98%), Gaps = 6/464 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaggtcttcacaatagaaaaatgtgacatttctgttgcacttctcagtgacat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaggtcttgacaatagaaaaatgtgacatttctgttgcacttctcagtgacat 264

                                                                       
Query: 65  ggctactgacaccctgcagaaaaagactaaaaaaaaaaaagctacactatttaccatctg 124
           |||||||||||||||||||||||||||      ||||||||||||||||||| |||||||
Sbjct: 265 ggctactgacaccctgcagaaaaagac------aaaaaaagctacactatttcccatctg 318

                                                                       
Query: 125 ttttagagaaaattctataacaagttgatgttttaaacctagtctaaagtctttaatgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttttagagaaaattctataacaagttgatgttttaaacctagtctaaagtctttaatgtg 378

                                                                       
Query: 185 gaaaagttacattagcaagtcttttgtagcaagaagcttcatcaaccaaggtggcatctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaaagttacattagcaagtcttttgtagcaagaagcttcatcaaccaaggtggcatctt 438

                                                                       
Query: 245 gacactagaaagagacaataattaacatcaagccccaatgtcccaaaaataataacatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gacactagaaagagacaataattaacatcaagccccaatgtcccaaaaataataacatca 498

                                                                       
Query: 305 tctgaaacatgcaaagttctggcatgacttcagctcttacaaaaagtgtttccatattct 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctgaaacatgcaaagtcctggcatgacttcagctcttacaaaaagtgtttccatattct 558

                                                                       
Query: 365 tgacaacaaagcattcctgtacttgataataagtagatgataatatgatggttgtgtttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgacaacaaagcattcctgtacttgataataagtagatgataatatgatggttgtgtttg 618

                                                       
Query: 425 ttagacttacaatgatcttaaaactttaacaaagcaaaatattt 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttagacttacaatgatcttaaaactttaacaaagcaaaatattt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 916
Length adjustment: 10
Effective length of query: 512
Effective length of database: 906
Effective search space:   463872
Effective search space used:   463872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)