BAC Information

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BAC

Clone NameMSMg01-084D01
Chromosome14 (Build37)
Map Location 35,087,662 - 35,088,149
singlet/doubletsinglet
Overlap gene3110001K24Rik
Upstream geneArhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, LOC623142
Downstream geneGlud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D01.T7 (MSMg01no084_d01.b1)MSMg01-084D01.TJ (MSMg01no084_d01.g1)
ACCAG304115AG304116
length696778
length of high quality
(start - end)
494 (44 - 537)192 (74 - 265)
definitionCHROMAT_FILE: MSMg01no084_d01.b1 PHD_FILE: MSMg01no084_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:09 2005CHROMAT_FILE: MSMg01no084_d01.g1 PHD_FILE: MSMg01no084_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGCCTTCATCCGGCTTGCTCAGTATGTACCTGTATGTATCTAATTG
CCCTGTTATAATTTATCAGTTTTACACAGTCAAGGCCATTTTCTAACTAA
TTCCTAAAGAGTGGAAGTTCCACACTTAAGCTGCTTGTTGAGATAAATAA
ACGAAGGCATAGTGAAATGGCTGTCATAGGTAAGTAACCATGTCTTTTAC
ATTAGTTGGATTCATTTCTGGATCTGGGGGCTGCCTCTGAAGTGTCAAGA
GTGATTGTGTCACTCAGTTGAGTACCAACATCTCCCCCTGAGTAGAAAGG
AGGGGGATCTTTGAATTTTTATCTTTGATTCTTCTGTGATACTATCAAGT
GTAGTAATGCTACAAATATGAATAGATCTGAAGTTGAAGAAGGGTTACCA
ACTTGTAAGGCACAATTGAATATATAATGGTATATGGGAATGAAATGAAT
AGGCTTGGATTCAGTTCTCTATAGTTGTGTGAAGTAACAAGACAGCCCAA
GAAACAGCAGAATGGAAAAATAAAATCAGATCAGTGGAGGAGCTCATTGT
TAAAGAGTAGTGTCCTGATACTATGGAACAGAGTGTCTCAGTGATAGCAC
TATGAGTACCCATTTTGTTAATTTGCACCTTGTTACTGTCTTAATN
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCGTTACTTTTAAAATCTCACTTCTT
AATCAGCAATTTATAAAAAGGCAGGTCATACCTGAGCCCTTCACAGAAAA
GACAGGTGTGGTAGACAGTTTTATGTCAACTTGACATGAGCTAAACTCAT
CTGAGAGGAAGGAACCTCAAATAAAAAAAAAATCTCAGGGTTGTTTTGAT
TTGCATTTCCCTGATGATTAAGGATGTTGATCATTTTTCCAGGTGCTTCT
CAGTCTTGCGTTATTCCTCCTCCGATAACTTTTTGCTCATTTTTGTACCC
CACTTTTCACCTTTCCCTACCTGATTCTCCATAGTTCCCCTTTCTGTCGC
TTCTTGTTGCTTGACCCCTTTTTTTTTTCCTATTTTCGACCAACCACCAT
CTGTGCCTTCTTTCCCCTCTTCTTTTTATTTGTCTCCCCCCCGCCCTTTT
TTTTACCTTCCCCTTTCCCCCCTTTTTTCTTTTCCTTTTCGCCCCTTCCC
CCTTTTGACCTTTCTTTCCCCATTTCCTCCTTATCCCTGTCTTCGTTTAG
CCTCCTTTTATTTCGTCCCCTTAACTGACAGTTCTCTCTCCCCTGCCGTT
CTCCCGCCTCCGCCTCGGTAGCGGCAGCCCCGGGTCTCTTAGGCTTATAT
TGCCCTCTTCCCCGCGTTCTTTTTGTCCGTCCCTCGGCGCTTTTTCCTTA
TCCTTCTTCTCCGCCCCTTTTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d01.b1 MSMg01no084_d01.b1 CHROMAT_FILE:
MSMg01no084_d01.b1 PHD_FILE: MSMg01no084_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:09 2005
         (494 letters)



>mm_chr14_35087458_35088349
          Length = 892

 Score =  851 bits (440), Expect = 0.0
 Identities = 477/490 (97%), Gaps = 2/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggccttcatccggcttgctcagtatgtacctgtatgtatctaattgccctgtt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaattcaggccttcatcaggcttgctcagtatgtacctgtatgtatctaattgccctgtt 633

                                                                       
Query: 65  ataatttatcagttttacacagtcaaggccattttctaactaattcctaaagagtggaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ataatttatcagttttacacagtcaaggccattttctaactaattcctaaagagtggaag 573

                                                                       
Query: 125 ttccacacttaagctgcttgttgagataaataaacgaaggcatagtgaaatggctgtcat 184
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 572 tcccacacttaagctgcttgttgagataaataaatgaaggcatagtgaaatggctgtcat 513

                                                                       
Query: 185 aggtaagtaaccatgtcttttacattagttggattcatttctggatctgggggctgcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aggtaagtaaccatgtcttttacattagttggattcatttctggatctgggggctgcctc 453

                                                                       
Query: 245 tgaagtgtcaagagtgattgtgtcactcagttgagtaccaacatctccccctgagtagaa 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||
Sbjct: 452 tgaagtgtcaagagtgattgtgtcactcagttgagtaccaacatctaccc--gagtagaa 395

                                                                       
Query: 305 aggagggggatctttgaatttttatctttgattcttctgtgatactatcaagtgtagtaa 364
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 394 aggagggggatctttgaacttttatcttcgattcttctgtgatactatcaagtgtagtaa 335

                                                                       
Query: 365 tgctacaaatatgaatagatctgaagttgaagaagggttaccaacttgtaaggcacaatt 424
           |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 334 tgctacaaatatgaataggtcttaagttgaagaagggttacaaacttgtaaggcacaatt 275

                                                                       
Query: 425 gaatatataatggtatatgggaatgaaatgaataggcttggattcagttctctatagttg 484
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaatatataacggtatgtgggaatgaaatgaataggcttggattcagttctctatagttg 215

                     
Query: 485 tgtgaagtaa 494
           ||||||||||
Sbjct: 214 tgtgaagtaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 892
Length adjustment: 10
Effective length of query: 484
Effective length of database: 882
Effective search space:   426888
Effective search space used:   426888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)