Query= MSMg01no084_h14.b1 MSMg01no084_h14.b1 CHROMAT_FILE:
MSMg01no084_h14.b1 PHD_FILE: MSMg01no084_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:30 2005
(399 letters)
>mm_chr14_67674445_67675243
Length = 799
Score = 683 bits (353), Expect = 0.0
Identities = 380/393 (96%), Gaps = 9/393 (2%)
Strand = Plus / Plus
Query: 7 aaaaaaaaaaaaaaaacacaccagaaaagctgtttctatacggttaatatcttgttacat 66
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 208 aaaaaaaaaaaaaaaa-acaccagaaaagctgtttgtatacggttaatatcttgttacat 266
Query: 67 attattaaggggtcaggaaacagacaccatgacccactgagagatgaaaatcaaaacgga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attattaaggggtcaggaaacagacaccatgacccactgagagatgaaaatcaaaacgga 326
Query: 127 ccctccctcccaataaagaaatccaaccctaatgtcctaaggcaaattgtcaatatgcat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccctccctcccaataaagaaatccaaccctaatgtcctaaggcaaattgtcaatatgcat 386
Query: 187 cagaagtcaaaaacagatgtattgatccaacaattgtatttcttcataaatatgtcctaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagaagtcaaaaacagatgtattgatccaacaattgtatttcttcataaatatgtcctaa 446
Query: 247 ataaagtattaggaactgtatgaaccaggtatagtgtgatacgtgattccagcactcctg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 447 ataaagtattaggaactgtatgaaccaggtatagtgtgatacgtgattccagcactcttg 506
Query: 307 gtagtattaaggcaagaggatcagaaagtcaagattatcttccccca----ccataagtt 362
||||||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 507 gtagtatgaaggcaagaggatcagaaagtcaagattatcttc----aattaccataagtt 562
Query: 363 tgaggctagcctgagctacataagaccctgtct 395
||||||||||||||||||||||||| |||||||
Sbjct: 563 tgaggctagcctgagctacataagatcctgtct 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_h14.g1 MSMg01no084_h14.g1 CHROMAT_FILE:
MSMg01no084_h14.g1 PHD_FILE: MSMg01no084_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:31 2005
(470 letters)
>mm_chr14_67789267_67790137
Length = 871
Score = 789 bits (408), Expect = 0.0
Identities = 449/470 (95%), Gaps = 15/470 (3%)
Strand = Plus / Minus
Query: 1 ttgtggcttgaggatactattggcaggtgatagaacagatcattttaatgatgactatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ttgtggcttgaggatactattggcaggtgatagaacagatcattttaatgatgactatct 800
Query: 61 ccatcacaatgatctcacagagttcagatatctgccatggccctctcacacagtcaagca 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 799 ccatcacaatgatctcacagagttcagatctctgccatggccctctcacacagtcaagca 740
Query: 121 aaggtttttatttctgaagtggcatcttccatcatcttaggattcttttaacagtctacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaggtttttatttctgaagtggcatcttccatcatcttaggattcttttaacagtctacc 680
Query: 181 agctcccacaagcctccaaataaagcctcccacaagaccaccaaataaattaactagcga 240
|||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 679 agct---------ct----gt-gagcctcccacaagaccaccaaataaattaactagcga 634
Query: 241 cagaagaaagtgtcttggcatgaaggg-aaaaaggaaagttcagtttgtgccaaaccatg 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 633 cagaagaaagtgtcttggcatgaagggaaaaaaggaaagttcagtttgtgccaaaccatg 574
Query: 300 acacagcgccatttgtgtatgtgcggtggtgttacatccaaaacagcaggtggaatctaa 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 573 acacagcgccatttgtgtatgtgcagtggtgttacatccaaaacagcaggtggaatctaa 514
Query: 360 ttagtcggggagcggaggagaaccagaaaaggccatcagcaaagggacacggaggaagga 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttagttggggagcggaggagaaccagaaaaggccatcagcaaagggacacggaggaagga 454
Query: 420 atcttgctagagagtaagacactatatgatgaaggtttgaagggatgtag 469
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 453 atcttgctagagagtaagacactagatgatgaaggtttgaagggatgtag 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space: 396060
Effective search space used: 396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
