BAC Information

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BAC

Clone NameMSMg01-084H18
Chromosome14 (Build37)
Map Location 56,041,405 - 56,041,731
singlet/doubletsinglet
Overlap geneEG667952
Upstream geneMrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729
Downstream geneDhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084H18.T7 (MSMg01no084_h18.b1)MSMg01-084H18.TJ (MSMg01no084_h18.g1)
ACCAG304322AG304323
length709791
length of high quality
(start - end)		328 (44 - 371)250 (128 - 377)
definitionCHROMAT_FILE: MSMg01no084_h18.b1 PHD_FILE: MSMg01no084_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:31 2005CHROMAT_FILE: MSMg01no084_h18.g1 PHD_FILE: MSMg01no084_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCAGAAATCCGCGGAATTCTGTACCATTACCTTCAAGGTCA
GCATAGACTACATGAAATGCTGTCTTTAAAAAAAAGACACACGGTATTAA
CTTCTCATCACAGTGAAAAAATGCATATAAGGCAGAGCTACACAGGCACA
GGGCCAGTCAGCTGTAGTTCCAACTAGGCAAGAAATCTGCCTCCCCTGTC
AACACTAAGTCTACCAGATGAGGGGAGACACGCCCACCGCATCGGAACCT
TGGGAACTCTAGACTAAAAGCTTGAAAGCACTGATACAGTGTCTTTTGTA
GTGCTCACCCTCACCTCCAGACTTTGTGCTGCAGCCCTAGTGTTTGGATG
GCTGTATCAAGGGGAAGGGGAAGGGGAAGGTGAAGTTTCCCCCCTTCCTT
TTTTTTCTCTTCCTTTCTTCTCTCCTTTCTCATCTCTCTTTCCTCTCTTT
CCTTTTTTTTTTATTCCCTTGCTCCCTCTTTCCTTTCTTCTCCTCTCCCC
ATCCTCCTCTCTCTCCTCATCCTTTCTCTTTCTCCTTTTCTCTTCATTTC
CCATTTCTTCTTATTTCCCTACTTCTTTTTTTTTTTTCTATTCTTCGTCT
ATTTTTATTTCGCTGTGTTTTTGTACCTTCTAGCTTTTCTTCTTTCTTCG
TTTTCTCTTTCTTTCTTTCCTCTTTTCTCCTCTCTTCGTTTTATTCTTCT
TTGTTCTTC

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGGNGNNGNCNNNCCATCTA
TNCATTCTATGAAGTTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTT
GAACTCAAACACCCACCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGC
GTGAGCCACCATGCCTGGCTGTTGGGATTCTTTTATAACACTTGTGTGTG
TGTCTATGGGTGAACAGAGGACAACTTCTGAAAGTCAGTACTCTCCTTCT
ACCATGTGAGCTCTGGGCATTAAGATCAGCTATGAGTATTGTGGCAGGCA
TCTTCACTGGGTGAGGGGCTGTGAGTGTACTTGGCTGGTGCTGTTGAAGT
GCTGTGCATTTGTGGCTCACCCTCTCTGCATACTGGAACAGTTCCAGAGC
AGGGCATGGATATGATAAGCACCCGCTTGTCATCTACTACATGATGCAGT
TTCTGGGCCTGGGAGGAAAGCCTGTTACTCTCCTTACTACATATTGTGCA
TCTTTCAAATATTCACCTACTTATTTAATGTACACTAGTACTCTGTTTGA
TCTTCTTCACAAACCATTAAATAAGGCCCTCGGACCTCCACTACAGATGC
TTGTGAACCACCCTGCCTATCCTGCACATTGCATTTTATTACCCCTGAAA
TAATAAATACTGATCCTAATTATTGAACATCTCTTTAATTTCTGCAAATT
CCTCCCTTCTCTTATTCACACAGTTTTGCTTATTTATTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_h18.b1 MSMg01no084_h18.b1 CHROMAT_FILE:
MSMg01no084_h18.b1 PHD_FILE: MSMg01no084_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:31 2005
         (328 letters)



>mm_chr14_56041205_56041933
          Length = 729

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtcagcatagactacatgaaatgctgtctttaaaaaaaag-acacacggtattaact 59
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaggtcagcatagactacatgaaatgctgtctttaaaaaaaagtacacacggtattaact 260

                                                                       
Query: 60  tctcatcacagtgaaaaaatgcatataaggcagagctacacaggcacagggccagtcagc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcatcacagtgaaaaaatgcatataaggcagagctacacaggcacagggccagtcagc 320

                                                                       
Query: 120 tgtagttccaactaggcaagaaatctgcctcccctgtcaacactaagtctaccagatgag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagttccaactaggcaagaaatctgcctcccctgtcaacactaagtctaccagatgag 380

                                                                       
Query: 180 gggagacacgcccaccgcatcggaaccttgggaactctagactaaaagcttgaaagcact 239
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagacacgcccactgcatcggaaccttgggaactctagactaaaagcttgaaagcact 440

                                                                       
Query: 240 gatacagtgtcttttgtagtgctcaccctcacctccagactttgtgctgcagccctagtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatacagtgtcttttgtagtgctcaccctcacctccagactttgtgctgcagccctagtg 500

                                      
Query: 300 tttggatggctgtatcaaggggaaggg 326
           |||||||||||||||||||||||||||
Sbjct: 501 tttggatggctgtatcaaggggaaggg 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 729
Length adjustment: 9
Effective length of query: 319
Effective length of database: 720
Effective search space:   229680
Effective search space used:   229680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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