BAC Information

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BAC

Clone NameMSMg01-084M16
Chromosome14 (Build37)
Map Location 107,619,997 - 107,620,483
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084M16.T7 (MSMg01no084_m16.b1)MSMg01-084M16.TJ (MSMg01no084_m16.g1)
ACCAG304546AG304547
length724728
length of high quality
(start - end)
491 (39 - 529)452 (68 - 519)
definitionCHROMAT_FILE: MSMg01no084_m16.b1 PHD_FILE: MSMg01no084_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:55 2005CHROMAT_FILE: MSMg01no084_m16.g1 PHD_FILE: MSMg01no084_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TAGACATAACCTATTATACATGCGTATAACAGGGATTTTACTTTTTCCTT
TATATGATTTTGATTCTATGAAAAAAAATCACATGTAAATATCAAGGCAA
CAGGATATCTATATGCCACATTCAACTTAAAGACACATAAGCACAGAAGA
GAAAAGCCAGTGCATTATAAATATTTAGTAAGTTTCAGAAGGTCAAGAAG
TTCTAGAGAACTCATGTATAATATAGTGAAAAATAGCATATTTAACACTA
TTAACCTGTAAAGTCCAACATGGCTGAAACAGTTAACATTACACACTTTA
CTCTTTTTGTATTTAGGCTTTTTTCAGGGTCTTCCTGTTTTTCTCCAGCT
GGTTTAGAATTGACATTACTCTTGTCTCAGATTCCCACATGCTTTGCTTG
TAGACTTGATACAAGTGACTATACCAAGCTGTGGAAGACATTTCAATCGA
AAAAAGGGTATGAATTGAAAACCTGTGTCAAATGCGTCCAAAGATGAAAA
ATAAAAGGAAGGTAGAATAAGTGATAGTTTTCACAAATGTGCACATTTAC
TATTTTCATAAGAGTTTTAATTTGCCCATAAGATACAATGCAACTGACAA
AATTCCTAAATGTAAGCTTAAGCCCTTGATGGAAATGCACCAATAACTAC
CACCAAATTATATTATCTAGATAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGTACTATATTGAATAGGTAGGGAGAAAGTGG
GTAGCCTTGTCTAGTCCCAGATTTTAGTGGGATTGCTTCAAGTTTCTCTC
CATTTAGTTTGATGTTGTCTACTAGTGTGCTGTATATTACTTTTAATGTT
TAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTATTTGAAGCA
GTGGTGGATTTTTATCAATGTTTTCTCAGCATCTAATGAGATGATAATGT
GATTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGAATTTC
TGTATATTAAACCACCCCTGCACCCCTGGGATAAAGCCTACTTGATCATG
ATGCATGACCATTTTGATGTGTTCTTGGATTCGGTTTGCAAGTATTTTAT
TGAGTATTTTTGCATCGATATTCATAGGGGAAATTGGTCTGAAGTCCTCT
TTCTTTGTTGGATCTTTCTGTATTTTAGGAATCAGAGTAGTTGTGGCTTC
ATAGAACAAATTGGGTAGATTATCTTCTTTTTCTATTTTGTGGAATAGTT
CGAGTAGTATTGTATTTAGGATTTTCTTGGATTATTTGATACGATCTTTG
TATTCAACTCCTTCTGTTACTGTTTCTTTCACTTGGTCTGCGAAAATTAT
TAATCGCATTGTCTTCTATTTCTTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_m16.b1 MSMg01no084_m16.b1 CHROMAT_FILE:
MSMg01no084_m16.b1 PHD_FILE: MSMg01no084_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:55 2005
         (491 letters)



>mm_chr14_107619793_107620683
          Length = 891

 Score =  897 bits (464), Expect = 0.0
 Identities = 482/488 (98%), Gaps = 2/488 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatagacataacctattatacatgcgtataacagggattttactttttccttta 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatagacataaaatattatacatgcgtataacagggattttactttttccttta 264

                                                                       
Query: 65  tat-gattttgattctatgaaaaaaaatcacatgtaaatatcaaggcaacaggatatcta 123
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattg-ttttgattctatgaaaaaaaatcacatgtaaatatcaaggcaacaggatatcta 323

                                                                       
Query: 124 tatgccacattcaacttaaagacacataagcacagaagagaaaagccagtgcattataaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgccacattcaacttaaagacacataagcacagaagagaaaagccagtgcattataaa 383

                                                                       
Query: 184 tatttagtaagtttcagaaggtcaagaagttctagagaactcatgtataatatagtgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttagtaagtttcagaaggtcaagaagttctagagaactcatgtataatatagtgaaa 443

                                                                       
Query: 244 aatagcatatttaacactattaacctgtaaagtccaacatggctgaaacagttaacatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatagcatatttaacactattaacctgtaaagtccaacatggctgaaacagttaacatta 503

                                                                       
Query: 304 cacactttactctttttgtatttaggcttttttcagggtcttcctgtttttctccagctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacactttactctttttgtatttaggcttttttcagggtcttcctgtttttctccagctg 563

                                                                       
Query: 364 gtttagaattgacattactcttgtctcagattcccacatgctttgcttgtagacttgata 423
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtttagaattgacattactcctgtctcagattcccacatgctttgcttgtagacttgata 623

                                                                       
Query: 424 caagtgactataccaagctgtggaagacatttcaatcgaaaaaagggtatgaattgaaaa 483
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 caagtgactataccaagctgtggaagacatttcaatctaaaaaagggtatgaattgaaaa 683

                   
Query: 484 cctgtgtc 491
           ||||||||
Sbjct: 684 cctgtgtc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)