BAC Information

Click to search

BAC

Clone NameMSMg01-084N12
Chromosome14 (Build37)
Map Location 106,044,369 - 106,044,698
singlet/doubletsinglet
Overlap genenone
Upstream geneD130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376
Downstream geneLOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N12.T7 (MSMg01no084_n12.b1)MSMg01-084N12.TJ (MSMg01no084_n12.g1)
ACCAG304586AG304587
length1,080694
length of high quality
(start - end)
---434 (55 - 488)
definitionCHROMAT_FILE: MSMg01no084_n12.b1 PHD_FILE: MSMg01no084_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:59 2005CHROMAT_FILE: MSMg01no084_n12.g1 PHD_FILE: MSMg01no084_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTCTTTTTTCTCTCNTTTTTTCTTCGTGTTGTGTGTTGGGGGGGGGG
GGTTGGGGGTGGGGGGGTATATGGTGGTGGTTGTCAGAGGNGNNGNNGGG
GNTNAGTCGGGCAAAAGAANGGGNNNNNNNNNNNNTNNGTGNCTAAAAAA
AGGGGGGGNNNNNNNATNNGNNNNNGTGNGNNGNNGGNGNGGNGGNNGGG
GNTTTTTTTTTCTCCGGAAAGAGGGGGGGGGGGGTGGGGGGTGGGTGGTT
TGGAGGGGGGTGGGTGGTGATTTGGTGGTGTGATTTTTGTTGTTGTGTTT
GTGTGTGTTGGTGGGTTTTGTGGTGTTTTGTGTGTGTGGGTGGTGGTGGG
TGTGGTTGTGGTGTTTGTGTGGATGTGGGTTGGGGTGTTTTGGTTTGTGA
GGTGTTTTGTTTGTTGGGTGTGCGGTGTTTTTCTTTTTGTTCTGGTTTTC
TATCTTGCGGGGTGTGGGGGGGGGGAGTTTTTTTTTTTTTTTTGGAGGAG
GGGGGGGGTGGGGGGTGGGTTGTGGGTGGTCGGTTGTGTTTTGTGTGTGG
GTGTGTGGGGGGGTGTGGTTGGTGCGGGGGTGTGATTTGGTTTTTGTGTT
GTTTGTGTGTTGTGTGGTGGGGCCTGTGTGTTGTTGTGTGGTGTGGGTGG
GGTTTTGTGGGTTGGTATGTTGTGTTGTGTGGTGTTGGGGTGTGGGGTTG
GGGGCGTTGGGTGTTTTGGAGTGTGGTGGTTGTGTTGGTGTGTGGTGTGG
TTTGGTGTGGGTCTGGTGGTGGGTGGTTTGGGGGGTTGTGGGTGGTGTGG
TGGTTTGTGGTGTGATGGGTGGGGTATGTTTTTGTGGGTGGGGTGGGTGG
GATGTGTGGTGTGTGGGTGGTTTGGGTGTTGTTGTGTATGTTGTTTTGGT
GTTGGTGGAGGGGGTGTGGGGGTGGTGGTGTTTTGTTTGGTGGGTGGTGT
GTGTGTGGTGGTGTTGGGTGGGGGGTGGTGGTGGTGTATGGGGGGTTGGG
TTGTTGGGGGGTGGTGGGTGGGTGTTGTGTTTGTTAGTGGGTTTGGAGGT
GTTTATGTTTTGTAGGGGGTGTGGTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGGCCCTTTGCAACTCTTACTGCGAGTTGCTTCACTCTGCGACATA
CTTACATAAGATCCAAATTACCCACTGTTTTCTAGAATATGTAGGAACAT
TCTAGAAATACTCTAGAACCAGATTGTCTAGCTCACACCAGACATACCAT
GTATTAGCTGTGCAACTGACAACTTCCTTGGTTTTTTGGCTCCACATGTA
AAGTGAATTAAAATAGTGTTTACTTCATTGATTTGTTTGAGAATTGAGTT
TTTGAAAATGGACAAAATGCTAAAATGACACATGGTATATTATGTGCACC
CTAAAGGTAGAGATTGGTAGTATGCAACTCACTGCTCTAAGATTGCTTAC
ATTCTTGCCAATTTTTTCTGCAAGCACACTCAGGTACCAACCTGGTTTCT
TGAATTTGTTCCTTTTGCAGATTCATCTAAAATATCAATTAGCCAACATA
AGACAATATATTGCCTCATTCCTGAAATGTCTTACTCAGTAGTCAGAGTC
TGTACTTGTGCCTGATGCAATAGTATAGCCATACATACGGAGAAATTTTA
CATCTGGGCACTTTATTGCCTAAGCAACAGGACCCATGTTCTATGGTTTG
TTACAGTCAAAGCCCCATTTCTAGGCAACAAATTCTTTGTCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n12.g1 MSMg01no084_n12.g1 CHROMAT_FILE:
MSMg01no084_n12.g1 PHD_FILE: MSMg01no084_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:59 2005
         (434 letters)



>mm_chr14_106043865_106044698
          Length = 834

 Score =  607 bits (314), Expect = e-178
 Identities = 326/330 (98%)
 Strand = Plus / Minus

                                                                       
Query: 105 tactctagaaccagattgtctagctcacaccagacataccatgtattagctgtgcaactg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tactctagaaccagattgtctagctcacaccagacataccatgtattagctgtgcaactg 775

                                                                       
Query: 165 acaacttccttggttttttggctccacatgtaaagtgaattaaaatagtgtttacttcat 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 acaacttccttggttttttggctccacatgtaaagtgaattaaaatagtgtttacttcat 715

                                                                       
Query: 225 tgatttgtttgagaattgagtttttgaaaatggacaaaatgctaaaatgacacatggtat 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgatttgtttgagaattgagtttttgaaaatggacaaaatgctaaaatgacacatggtat 655

                                                                       
Query: 285 attatgtgcaccctaaaggtagagattggtagtatgcaactcactgctctaagattgctt 344
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 attatgtgtacccgaaaggtagagattggtagtatgcaactcactgctctaagattgctt 595

                                                                       
Query: 345 acattcttgccaattttttctgcaagcacactcaggtaccaacctggtttcttgaatttg 404
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agattcttgccaattttttctgcaagcacactcaggtaccaacctggtttcttgaatttg 535

                                         
Query: 405 ttccttttgcagattcatctaaaatatcaa 434
           ||||||||| ||||||||||||||||||||
Sbjct: 534 ttccttttgtagattcatctaaaatatcaa 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)