BAC Information

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BAC

Clone NameMSMg01-084P19
Chromosome14 (Build37)
Map Location 21,839,595 - 21,840,154
singlet/doubletsinglet
Overlap geneVcl
Upstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119
Downstream geneAp3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P19.T7 (MSMg01no084_p19.b1)MSMg01-084P19.TJ (MSMg01no084_p19.g1)
ACCAG304694AG304695
length714714
length of high quality
(start - end)
564 (37 - 600)534 (66 - 599)
definitionCHROMAT_FILE: MSMg01no084_p19.b1 PHD_FILE: MSMg01no084_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:09 2005CHROMAT_FILE: MSMg01no084_p19.g1 PHD_FILE: MSMg01no084_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAG
TGTTGTACCTTCTCATGAGATGCAAACAGACAACAGTGTTTTCAAATCTT
TGTTCTTCTAAAAGCAAATTCAGCTCCATTTCTGTTCTCCTGACAGGGCT
GGTGGACGAGGCTATTGATACCAAGTCTCTGTTGGATGCTTCTGAAGAAG
CAATTAAAAAAGACCTGGACAAGTGTAAGGTAGCCATGGCCAATATTCAG
CCTCAGATGCTGGTCGCTGGAGCAACCAGTATTGCTCGTCGGGCCAACCG
GATTCTGCTGGTTGCTAAGAGGGAGGTAGAGAACTCTGAGGACCCGAAGT
TCCGAGAGGCTGTGAAAGCTGCCTCTGATGAACTGAGCAAAACAATCTCC
CCCATGGTGATGGATGCCAAGGCTGTGGCTGGAAACATCTCTGACCCTGG
TAAGGAACAGTGCATGGTGCCTTTCATTCCAATTGCTAGGCTAACTCGGT
GGAAATAGGAAAAGAGTAGTTATCCACAACCACGGTATATAAAATCGGGG
AGGGAACATATGGACAGTGCCTGGTTTGGTGCTCTCTCTCTTGTCATCTC
AACACCCAGGAGGCTGATACAGAAGGATAGCTGTCAGTTTGAGGTCAGTC
AGGGCAGAGTTACAGAATGAGTTACAGAATGTAGACATTTAGGTTTTCTT
CTGCTCAATATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAACT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCTGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGTAGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCCTGTACAACCACTCTGGAAACCAGTCTGGTGGTTCCTCAGAA
AATTGGATATAGTACTACCAGAGGATCCCGCAATACCCCTCCTGGGCATA
TATCCAGAAGATGTTCCAATAGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCTTTATTTATAATAGTCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAACAGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGTAAATG
GATGGACCTGGAGGGCATCATTCTGAGTGAGGTAACCCAATCACAAAAGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GGATACCCAAGATATAAGATACAATTTGCTAAACACTTGAAACTCAAGAA
GAACATTGACCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p19.b1 MSMg01no084_p19.b1 CHROMAT_FILE:
MSMg01no084_p19.b1 PHD_FILE: MSMg01no084_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:09 2005
         (564 letters)



>mm_chr14_21839391_21840354
          Length = 964

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgagtgttgtaccttctcatgagatgcaaacagacaacagtgttttcaaatctt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgagtgttgtactttctcatgagatgcaaacagacaacagtgttttcaaatctt 264

                                                                       
Query: 65  tgttcttctaaaagcaaattcagctccatttctgttctcctgacagggctggtggacgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttcttctaaaagcaaattcagctccatttctgttctcctgacagggctggtggacgag 324

                                                                       
Query: 125 gctattgataccaagtctctgttggatgcttctgaagaagcaattaaaaaagacctggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctattgataccaagtctctgttggatgcttctgaagaagcaattaaaaaagacctggac 384

                                                                       
Query: 185 aagtgtaaggtagccatggccaatattcagcctcagatgctggtcgctggagcaaccagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtgtaaggtagccatggccaatattcagcctcagatgctggtcgctggagcaaccagt 444

                                                                       
Query: 245 attgctcgtcgggccaaccggattctgctggttgctaagagggaggtagagaactctgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attgctcgtcgggccaaccggattctgctggttgctaagagggaggtagagaactctgag 504

                                                                       
Query: 305 gacccgaagttccgagaggctgtgaaagctgcctctgatgaactgagcaaaacaatctcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacccgaagttccgagaggctgtgaaagctgcctctgatgaactgagcaaaacaatctcc 564

                                                                       
Query: 365 cccatggtgatggatgccaaggctgtggctggaaacatctctgaccctggtaaggaacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccatggtgatggatgccaaggctgtggctggaaacatctctgaccctggtaaggaacag 624

                                                                       
Query: 425 tgcatggtgcctttcattccaattgctaggctaactcggtggaaataggaaaagagtagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 tgcatggtgcctttcattccaattgctaggctaactcggtggaaataggaaaagagtagc 684

                                                                       
Query: 485 tatccacaaccacggtatataaaatcggggagggaacatatggacagtgcctggtttggt 544
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 tatccacaaccagggtatataaaatcggggagggaacatatggacagtgcgtggtttggt 744

                               
Query: 545 gctctctctcttgtcatctc 564
           ||||||||||||||||||||
Sbjct: 745 gctctctctcttgtcatctc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)