BAC Information

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BAC

Clone NameMSMg01-086E05
Chromosome14 (Build37)
Map Location 107,960,648 - 107,961,197
singlet/doubletsinglet
Overlap geneLOC668752
Upstream geneLOC668748
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086E05.T7 (MSMg01no086_e05.b1)MSMg01-086E05.TJ (MSMg01no086_e05.g1)
ACCAG305624AG305625
length703706
length of high quality
(start - end)
551 (67 - 617)373 (329 - 701)
definitionCHROMAT_FILE: MSMg01no086_e05.b1 PHD_FILE: MSMg01no086_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:56 2005CHROMAT_FILE: MSMg01no086_e05.g1 PHD_FILE: MSMg01no086_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGCCTGTACGCATGCTTATGATACACTTCATGATAAATAATAAAAAG
GCTCCATTCAAAGCATTACTGATTTGGGTACTTGTATTTTTCAAACGTGG
TCTATAGGAAGGATCCCAGGAAAGGCTATTTTGGTCTCCTATTTCCTATT
ATTTCCTGTCACCTGTCAGTTGCATCTTTTCACATCTGTTCTGAAATGGT
TTATCATTTCAGCTCTGTTCAATGTTCAGTATTTTTGACTCATTCTGCTT
TTCTTAATCACTTCCCCAAAAGTAATCATAATCTCCCTCAATTGCCTCGC
AGAGAGGAAGTGGAGCACATCTAATCCCACATCACAATCTATACAATTCA
TAGAATGCATCAAATTATGCTTATAAAAATAATTTTCAAATGGTGACAAA
TCAAAACTCTTATTTTACATGTTCTATCATAAGGACTCATTGTTTCTATA
AGTCTGGGAAGGCTTTAGGGAAACAAATTTGCAATTTTCTTCACTCAATT
TAGTCTTTTTTCATAGTATTTGCATGTGAGATATGAAGTATTTGATGCAT
AGCGATTTCTTTTTTCTGTACCAATAGTATGCTGTTCTCTCATAATACTG
CATTCACTCATTTTTACTACCTTTTAACTGATGTTTCTTTCACTTTATTT
TTA
GAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAAATTCAAAACTCCACTTTTGCCAATGGACAGTA
ACTAGAGAGAGAAAAAATAAATAGAGAAATAATAAAATGGATATTATTAT
CATAATGGACTTACCAAATATCTATGAAACAAGGTACCCAAACACAAAGG
AATTAATCTCAGCACCTCAGATAATCTTCTCTAAAATTCCCCATGTAGTT
TCATATACAAAGCCTCACAGATACAAGATTGAGCTAAACCCTTGCATCTT
ATCATATCAAATTAGATTATTTTTTTTTTCAACAACAGAAACAAAGTAAA
GCCTACAATCTCATAGAAAATAAACAAATCTATAATCAATGACCACTGCA
TCAATGAAGAAATTAAGGGAAAAAAACCTTAAATACTTTGTAGAATTCAA
TAAAAATGAAAGTACAACATACTCAAACCTGTGAGACACAATGAAAGCAG
AGCTAAGAGAAAAGATTATTGTACTAATTGCCTTCATGATGAAATTGGAG
AGATCACATATAAGCAACTAAATACAACACCTGAAAGCTATACAAAATGA
AGCAAATGCACTCCAGATGAATAGAGGGCAGGAAATAATCAAACACAGGT
CTGAAATCAATCAATTAGAAAAAAAGAGAACAATATAAGGAATCAATTCT
ATCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_e05.b1 MSMg01no086_e05.b1 CHROMAT_FILE:
MSMg01no086_e05.b1 PHD_FILE: MSMg01no086_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:56 2005
         (551 letters)



>mm_chr14_107960448_107961397
          Length = 950

 Score = 1004 bits (519), Expect = 0.0
 Identities = 543/551 (98%), Gaps = 1/551 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttatgatacacttcatgataaataataaaaaggctccattcaaagcattactgatttg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gcttatgatacacttcatgataaataatcaaaaggctccattcaaagcattactgatttg 260

                                                                       
Query: 61  ggtacttgtatttttcaaacgtggtctataggaaggatcccaggaaaggctattttggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtacttgtatttttcaaacgtggtctataggaaggatcccaggaaaggctattttggtc 320

                                                                       
Query: 121 tcctatttcctattatttcctgtcacctgtcagttgcatcttttcacatctgttctgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctatttcctattatttcctgtcacctgtcagttgcatcttttcacatctgttctgaaa 380

                                                                       
Query: 181 tggtttatcatttcagctctgttcaatgttcagtatttttgactcattctgcttttctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtttatcatttcagctctgttcaatgttcagtatttttgactcattctgcttttctta 440

                                                                       
Query: 241 atcacttccccaaaagtaatcataatctccctcaattgcctcgcagagaggaagtggagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcacttccccaaaagtaatcataatctccctcaattgcctcgcagagaggaagtggagc 500

                                                                       
Query: 301 acatctaatcccacatcacaatctatacaattcatagaatgcatcaaattatgcttataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatctaatcccacatcacaatctatacaattcatagaatgcatcaaattatgcttataa 560

                                                                       
Query: 361 aaataattttcaaatggtgacaaatcaaaactcttattttacatgttctatcataaggac 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 aaataattttcaaatggtgacaaatcaaaattcttattttacatgttctatcataaggac 620

                                                                       
Query: 421 tcattgtttctataagtctgggaaggctttagggaaacaaatttgcaattttcttcactc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tcattgtttctataagtctgggaaggctttagggaaacaaatttgcaattttcttcacgc 680

                                                                       
Query: 481 aatttagtcttttttcatagtatttgcatgtgagatatgaagtatttgatgcatagcgat 540
           |||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 aattgagt-ttttttcttagcatttgcatgtgagatatgaagtatttgatgcatagtgat 739

                      
Query: 541 ttcttttttct 551
           |||||||||||
Sbjct: 740 ttcttttttct 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space:   508540
Effective search space used:   508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)