BAC Information

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BAC

Clone NameMSMg01-087D09
Chromosome14 (Build37)
Map Location 101,350,009 - 101,350,251
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf12, LOC100043413, EG668683, EG668684
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087D09.T7 (MSMg01no087_d09.b1)MSMg01-087D09.TJ (MSMg01no087_d09.g1)
ACCAG306309AG306310
length699706
length of high quality
(start - end)
314 (46 - 359)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no087_d09.b1 PHD_FILE: MSMg01no087_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:14 2005CHROMAT_FILE: MSMg01no087_d09.g1 PHD_FILE: MSMg01no087_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAATCCCTCCACCTTTACTTCTTGAGTCTTGTGATTACAGTTGT
GTGCCACCATGACTGATAGCTTTTAATTTAATTTAATTTAATTTAATTTA
AATCTTTGAGCTGTCATTTTTCCCACATAAGTCTTCCAAATGTTGGATTC
CAGGTGTGCATTGCTTTTTGCCTTTTATTTGTTCTTAAATTATATGTACA
TACATACATACATACGTACATACATACATATGTACATACATACATACGTA
CATACATACATATATACATCATACATACATATGTACATACATATATAATC
ATACATATGTACATACATACCTACATGCGTACGTACATGTATGCTTTCTC
AAATGTATGTCTTTTCACTACCTCTGTTCTTGGTACCATTGGGAGTCAAT
AGAGGGCATAGCATTCCCTTGGACTGCTCTTACAGGTGACTGTGAGTTGC
CATGTACGCTCTGGGAACCAAATGAGGTCCCTATGGCACAGCACTGCGCT
GTTGCTAACTGCTACTTCATATATCTAGACTGTCTTCCATTTCCAAGCTT
TGATTCTTCTTACTGACATTTGCAACAGATACCGCATGAAACTACTTGCC
TGAATGCATTTTTCTTATTCTACTTAAATTCGCTCATTTCAAAAAAAAG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCTCTGGGGTTTCTTTGAAATCT
GGGGAGAATGATTTGTGTGACCAGGGGGAATAGAGGAATCATGGGGGGAG
CTCATTCCTTCTTGCCACATTGCTGTGCTGCAGAGGAAGAGCCTGGTCTG
CCTTGGGATGGAGTTGAAAGGAAATCAACAAGGCAGCTTCAAGTATGCCA
GAATTTGTTATGGACTTGCCAACTTTTCAAACATAACTGTCTGTGTTCGG
AGGCTGCCAACACTAATCACACATGGTTCAGTACTGCAGATCTTCCCAAT
AATTGTTTTTTTCTCCCCCCGCTCCCGTCTTCAGCGTGCTCAAAAGGTAA
CCGTGCGATGCCCCCTTGCTTACATACATTGTACCCGCCCAATGATCCCA
TTGCTTCCCAAAATTGACGCTTGACCACATTCATATTCCTAGTTACCTTC
TATCCGCGCCAATTTGTTGAGTTACACAGTATCGTTCCACCCCTTAAGAA
CACCCCCTTGCTTTAGACTAATCCCCCTCCGTTCCCTTTTCGCCCACTTG
TATGCTCCCCCAATATACTCTTCATCCTTTGCAATCTCTACCTTTGCCCT
CCGCATTTCATCACCTTACCTATTCACCACTTATTTACCCAACTCCTCCG
ACCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_d09.g1 MSMg01no087_d09.g1 CHROMAT_FILE:
MSMg01no087_d09.g1 PHD_FILE: MSMg01no087_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:14 2005
         (239 letters)



>mm_chr14_101349815_101350453
          Length = 639

 Score =  404 bits (209), Expect = e-117
 Identities = 232/243 (95%), Gaps = 6/243 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgctctggggtttctttgaaatctggggagaatgatttgtgtgaccagggggaatagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 195 cgctctggggtttctttgaaatctggggagaatgatttgtgtgaggagggggaatagagg 254

                                                                       
Query: 61  aatcatgggggg------agctcattccttcttgccacattgctgtgctgcagaggaaga 114
           ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatcatggggggggggggagctcattccttcttgccacattgctgtgctgcagaggaaga 314

                                                                       
Query: 115 gcctggtctgccttgggatggagttgaaaggaaatcaacaaggcagcttcaagtatgcca 174
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 315 gtctggtctgccttgggatggagttgaaaggaaatcaacaaggcagcttcaagtatgcaa 374

                                                                       
Query: 175 gaatttgttatggacttgccaacttttcaaacataactgtctgtgttcggaggctgccaa 234
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 375 gaatttgttatggacttgccaacttttcaaacataactgtctgtgttcagaggctgccaa 434

              
Query: 235 cac 237
           |||
Sbjct: 435 cac 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)