BAC Information

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BAC

Clone NameMSMg01-087D13
Chromosome14 (Build37)
Map Location 102,874,459 - 103,012,497
singlet/doubletdoublet
Overlap geneLOC669278
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087D13.T7 (MSMg01no087_d13.b1)MSMg01-087D13.TJ (MSMg01no087_d13.g1)
ACCAG306317AG306318
length704708
length of high quality
(start - end)
502 (67 - 568)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no087_d13.b1 PHD_FILE: MSMg01no087_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:15 2005CHROMAT_FILE: MSMg01no087_d13.g1 PHD_FILE: MSMg01no087_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,874,459 - 102,874,959)(103,012,206 - 103,012,497)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGAGTTGACCTGTAGCCATTTCCTACAGAATCATGGCACAGATGATTC
TGCATTTGTGCTCACACACGTTACAAGTTTGATTGACATTCCATTTCCCA
ATATCATCATCTAATCGTTATCTTGAATGTCAGTCATGAGCAGCAACAAA
CAGAAGCTAACACATGTCAGGAGAAGCTTTACAAATCAGCCCGCGGCCCC
ATTTCTAGACAAGACATCCTAAGAGCTGCCTTTCTCTTCCTACTTCTCAA
ATGCTTTCAGTAATTAACATTTTTATAGCTTTCAAGTGGCACCATTTTTT
CTCACTGTCAATATTTAATTCCATAATGCCCATAACCAACCTCATAAGAA
TGTATATTTTCCCCTTTAGAGCCTCAAGAAAGTGATTAAAAATTCAATGA
AATATGTCATGTAAAATATGCATATTTCAAAAATGTGAAACTGTAAAATG
TATACTGTATGCAAATACAAGCCATTTCCTAAATGGTCTTCTCATTTAAG
AATTTTATCTATTACAGCTTCTCAGAAAATCAGGAATCAATCCTAAATGG
ATTCTGTGGAGTATAATTAGAAGTCCTAAATATTTTTTGGTGCTCAATAA
CCACTTTATTCGCTTATATTCTTTATTAGGCATTTATCTCATTAACATTT
CCCC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAAGGTTGGCCTAGGTGACATTCC
TTGTACCATCCAATGAAACACTGCCTTAAGAAACTGTCATCCAGCTGGCA
TCCATGGTGACACCTAGCAAAACCTTGCAGTGCTCCAGCATGGAGCCAGA
ATGCCTGGAATAGAGGTGATGGTGACAAGGTAATGAGCAAAGTCTTCTAC
ACTGAATGTTAAGTAGTCTGGCTAATATTTTCTAAGTTTGTTGGGGTTTA
ACAGATAAGATTGCTAATGCCATGGTTCAGACTCTCTCTCTCTTCCTGAC
CTCTGCTGATTCCAGTGAAGTACACATTGTTTCGGAAGAAAGGAAATCTC
TTCCTATATTTAACTCTGTTAGGGTTTATATGGTTATAGATTCAGAGTCT
TGTATTCGCTGAGTGAAAATAAATAGACACACATATACACACACATACAT
ACACACTAACTTACACACACACAGGTACATGCATACTCTCATGCAGGCAT
GCATGCACATGCACTCTCATGTGCACACACACTCACACTCAACAAACATA
CTTGGCCCTTTTTTGTATTTCTAAAATTGCAATCATATATCCCCTCTCTC
TTTCTGTATATGTGGAGGCCGGAACACAGAGATTATATACCCCCACCTAG
CCCGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_d13.b1 MSMg01no087_d13.b1 CHROMAT_FILE:
MSMg01no087_d13.b1 PHD_FILE: MSMg01no087_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:15 2005
         (502 letters)



>mm_chr14_102874259_102875160
          Length = 902

 Score =  930 bits (481), Expect = 0.0
 Identities = 496/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccatttcctacagaatcatggcacagatgattctgcatttgtgctcacacacgttacaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gccatttcctacagaatcatggcacagatgattctgcatttgtcctcacacacgttacaa 260

                                                                       
Query: 61  gtttgattgacattccatttcccaatatcatcatctaatcgttatcttgaatgtcagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgattgacattccatttcccaatatcatcatctaatcgttatcttgaatgtcagtca 320

                                                                       
Query: 121 tgagcagcaacaaacagaagctaacacatgtcaggagaagctttacaaatcagcccgcgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgagcagcaacaaacagaagctaacacatgtcaggagaagctttacaaatcagcccgccg 380

                                                                       
Query: 181 ccccatttctagacaagacatcctaagagctgcctttctcttcctacttctcaaatgctt 240
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 acccatttttagacaagacatcctaagagctgcctttctcttcctacttctcaaatactt 440

                                                                       
Query: 241 tcagtaattaacatttttatagctttcaagtggcaccattttttctcactgtcaatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtaattaacatttttatagctttcaagtggcaccattttttctcactgtcaatattt 500

                                                                       
Query: 301 aattccataatgcccataaccaacctcataagaatgtatattttcccctttagagcctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattccataatgcccataaccaacctcataagaatgtatattttcccctttagagcctca 560

                                                                       
Query: 361 agaaagtgattaaaaattcaatgaaatatgtcatgtaaaatatgcatatttcaaaaatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaagtgattaaaaattcaatgaaatatgtcatgtaaaatatgcatatttcaaaaatgt 620

                                                                       
Query: 421 gaaactgtaaaatgtatactgtatgcaaatacaagccatttcctaaatggtcttctcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaactgtaaaatgtatactgtatgcaaatacaagccatttcctaaatggtcttctcatt 680

                                
Query: 481 taagaattttatctattacag 501
           |||||||||||||||||||||
Sbjct: 681 taagaattttatctattacag 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no087_d13.g1 MSMg01no087_d13.g1 CHROMAT_FILE:
MSMg01no087_d13.g1 PHD_FILE: MSMg01no087_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:15 2005
         (292 letters)



>mm_chr14_103012006_103012697
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaggttggcctaggtgacattccttgtaccatccaatgaaacactgccttaagaaac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 492 attaaggttggcctaggtgacattccttgtaccatccaaagaaacactgccttaagaaac 433

                                                                       
Query: 61  tgtcatccagctggcatccatggtgacacctagcaaaaccttgcagtgctccagcatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgtcatccagctggcatccatggtgacacctagcaaaaccttgcagtgctccagcatgga 373

                                                                       
Query: 121 gccagaatgcctggaatagaggtgatggtgacaaggtaatgagcaaagtcttctacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gccagaatgcctggaatagaggtgatggtgacaaggtaatgagcaaagtcttctacactg 313

                                                                       
Query: 181 aatgttaagtagtctggctaatattttctaagtttgttggggtttaacagataagattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aatgttaagtagtctggctaatattttctaagtttgttggggtttaacagataagattgc 253

                                                               
Query: 241 taatgccatggttcagactctctctctcttcctgacctctgctgattccagt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taatgccatggttcagactctctctctcttcctgacctctgctgattccagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)