BAC Information

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BAC

Clone NameMSMg01-087E03
Chromosome14 (Build37)
Map Location 80,120,821 - 80,121,358
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
Downstream genePcdh8, EG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087E03.T7 (MSMg01no087_e03.b1)MSMg01-087E03.TJ (MSMg01no087_e03.g1)
ACCAG306342AG306343
length1,079709
length of high quality
(start - end)
---538 (74 - 611)
definitionCHROMAT_FILE: MSMg01no087_e03.b1 PHD_FILE: MSMg01no087_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:18 2005CHROMAT_FILE: MSMg01no087_e03.g1 PHD_FILE: MSMg01no087_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAACAAAACAAACANCAAAACAAGACAATCACAAATGACACAGATCAAC
GCAAACACAATACACGAACATCTATCCTCGGAGCGGGCGGGGGCCGTTGC
GGGACTGATTTCCGCGGCGGTGTTACGTATATTAATAATAACCTGTAAAT
TTACCATATAATTATAAGATATATACAGGACCGATAGCATCACGGTAATA
TATAGAAAAGACCCTATCAGCCGGAGAGAGACACCCTTTTCTCCTTGTCC
AAACGCTACAAGGCGAAACAGGCGCCACTTTTCAATTCCTCACATCTGCT
CCTCGCCTCGTTGTCGCCCGCTNCCACTGCTCCGCCAGATTACTTCTTGT
TTTCTTTATCTTTATATCTACTTCGTCCACTATACATACTATAATGAACA
CCATTTGTCACATATATACATTAACAAATAATTAATAATATATAGTAATA
AGATAAGGATTAAAACCAATTTATAATCCCGATATCAAACGTACTGCCAC
GACTGCTTTCTACAATATACCGCATAACACAAATATACAACGTTTCAACA
TCATACACATATTTATAATATAAACCGACTATACAACGACACGTTTAGAC
GAGTGCGGTCACCTACCTTAGACCGGTGGTAAGGAGGGAGGGGAGTGGAG
AGAAAGGGTGGGTGCGAGTTGGCGCGGTGTACGCCCGGTGGCAGGCCGAT
GTACACAGGTTTCGACAGGCCGAGTTCGACGGTGGTCGACGGCGTTGCGC
CGAGGGTCGACGACTTTTGAGAGGTCACGGTTCCGCGAATCCGCATACGA
CTGAATTCGCTTATCGTGGAGCAACGCCGGCCGCGTCGGCGCGAGAATAG
GGGTCGAGTAATGGTGGTGTGGAGTAACGAGTCAGCTGCGGTTGCAACGT
GTTTAGACACCAGCAATGAGCTATACATATAGATAGCACGTGAATCACGA
CCTATTTCCGGTGGGTGATTAGCGACGTTTTATGCGGCCGTCTTGACGTT
TTATTATTCGCGTGTTATTACCCGCTCTTCCTTAATGCACCAATAGTATA
TTACAAGTATTTATTTATGTTACGCCGGN
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAGGGACAGAGAGAGGACGGGAAT
GGGGGAAACAGGCCAGGTGGACATACACAAAGGAGTGTCAAGAAAAATGG
CTGTTGAGGCAATCTGAGGTTACAGGACCCTGGATGCCTTCCAGCTGTGC
CATTTGAATAAGTTGGGGTAAATGGAACTCTGAGGTGCCCCCCAGGGGAG
AAAGAGTATGTGGCAGGTGAAGATTACAAGCTTGAAAGCTCACAGGGAAA
ACAAGAACTTGGGATGAACTAGCAGGGTAAAGGCCTGGAAACCTGTAAGG
AGAAAGAAGAGAGAATAAGATAGTCCAAGCCGAAGAAGGTGGCCCATGGC
CCAGACCAAAAAAGATGGCGCCCATTGCCAGTTCTACTGAGAAGAGTGCC
CCCCACCTTGAAAGCAGAAAATGGAGTTGAGTGTGCATTAGGGTAGATGG
GAGATGACTGGAAATCACAGCATGGGCCTCAACTTCTCAAGTAAGCCAAG
GCGTGGCTACTGCCTAGTTGGGACAGCGGAAGGGGGCAGCTAAAGAACTG
GTGTGTTTCCTAACACCCCAGACAGATGAGAATAGAGGCCGAAGAGTGGA
GTTTTAGTGTCATAGGTAAGTGACAGCGATTATATGAGGAATCACAGTGA
GCTGAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_e03.g1 MSMg01no087_e03.g1 CHROMAT_FILE:
MSMg01no087_e03.g1 PHD_FILE: MSMg01no087_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:18 2005
         (538 letters)



>mm_chr14_80120621_80121558
          Length = 938

 Score =  971 bits (502), Expect = 0.0
 Identities = 529/538 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagggacagagagaggacgggaatgggggaaacaggccaggtggacatacacaaagg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 738 acagagggacagagagaggacgggaaagggggaaacaggccaggtggacatacacaaagg 679

                                                                       
Query: 61  agtgtcaagaaaaatggctgttgaggcaatctgaggttacaggaccctggatgccttcca 120
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 678 agtgtcaagaaaaatggttgttgaggctatctgaggttacaggaccctggatgccttcca 619

                                                                       
Query: 121 gctgtgccatttgaataagttggggtaaatggaactctgaggtgccccccaggggagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gctgtgccatttgaataagttggggtaaatggaactctgaggtgccccccaggggagaaa 559

                                                                       
Query: 181 gagtatgtggcaggtgaagattacaagcttgaaagctcacagggaaaacaagaacttggg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 558 gagtatgtggcaggtgaagattacaagcttgaaagctcacagagaaaacaagaacttggg 499

                                                                       
Query: 241 atgaactagcagggtaaaggcctggaaacctgtaaggagaaagaagagagaataagatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 498 atgaactagcagggtaaaggcctggaaacctgtaaggagaaagaagagagaataagataa 439

                                                                       
Query: 301 tccaagccgaagaaggtggcccatggcccagaccaaaaaagatggcgcccattgccagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tccaagccgaagaaggtggcccatggcccagaccaaaaaagatggcgcccattgccagtt 379

                                                                       
Query: 361 ctactgagaagagtgccccccaccttgaaagcagaaaatggagttgagtgtgcattaggg 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 378 ctactgagaagagtgccccccaccttgaaaccagaaaatggagttgagtgtgcattaggg 319

                                                                       
Query: 421 tagatgggagatgactggaaatcacagcatgggcctcaacttctcaagtaagccaaggcg 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 318 tagatgggagatgactggaaatcacagcatgggcctcaacttctcaagcaagcaaaggcg 259

                                                                     
Query: 481 tggctactgcctagttgggacagcggaagggggcagctaaagaactggtgtgtttcct 538
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 tggctactgcctagttgggacagcggaaggggacagctaaagaactggtgtgtttcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)