BAC Information

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BAC

Clone NameMSMg01-087F23
Chromosome14 (Build37)
Map Location 69,148,333 - 69,148,620
singlet/doubletsinglet
Overlap geneAdam7
Upstream geneLOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087F23.T7 (MSMg01no087_f23.b1)MSMg01-087F23.TJ (MSMg01no087_f23.g1)
ACCAG306422AG306423
length716720
length of high quality
(start - end)
324 (35 - 358)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no087_f23.b1 PHD_FILE: MSMg01no087_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:28 2005CHROMAT_FILE: MSMg01no087_f23.g1 PHD_FILE: MSMg01no087_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTCCTATTTGCAGAGATCCGCGGAATTCTGTA
TATATTCCCCATACTGTGGTGGTTTGAGTAGGCATGGCTCCCATATACTC
AAGTGTTTGAATGCTTGGTCTAAAGGGAGTAGCACAATTAGGAGGTGTGA
CATTGCTGGAGTGGGTGCGGCCTTGTTAGAGAAAATGTGTCACTGTGGGA
GTGGGCTTTGAGGTCTCCTATGCCCAAGCTAGGGCAAGTGTGGCACACAG
TCTCTCCTTGTTGCCTATGGATCAGGATGTAGAACTCTGAGCACCGTGTC
TGCCTGCACGCTGCTGTGCTTCCCACCATGACAATAATGGGCTAAACCTC
TAACTGTATTCCCGACCCCACTCACTGTTTTCCTTTATAGGAGCTGCTGT
GGTCATGGTGCCTCTTCACAGCAATATATCCTAACTAAGATACAAATACA
CATTATAATCTCATCGCTTCTTGTTTCTCTTTAGAACTAGGCAACCTGCC
AGCATAATACATAGAAACTTTGGTCCATTTTTCTACCTTAAAACAGGCTT
AGTTGCCATTTCCTAACAGTTCCCCGGCCTGCTAACTGCCATGTTTTATT
ATACATATGATTTATGAAAATTTAACACAAATAATAAATGTATTTATAGC
TTATCCAATACACCCCGATTGCATGATCGCACTTTCCTAGTCAGTCTTTA
TGATTGTATGGGAGAT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTAAAAATAGGCAACACCTATGAACAACT
ATGAGCCAGCATTATTAGGAATTCTCAACAAACAAACAAACACAATGACT
CAGACGCTCATCAAATCACTAATAACTAAACCAGAGGAGAAGAGCTGTGC
CAATAGTCATCAATGAAAGAGAACGTTAGAATCACACTGTTCATTACTGA
CAGCATCTACAACTGATAAACACTACTGTTGGGCTATCCAACCAGAGCTG
CTATTGACAGTGCTGTTAGAATTTCTGAATCTTTGCTCCTTTCTTCATAG
CATCTTGTTTGTGTGCACCACCCCCCTACTTATTTTGACCATGCTGTAGA
CAATGCAACTATTTATAATCAGAAGTGGTAATGATTTAGGAGTGAGAGAG
GAAGAAAATGGAGCCTATATGCAAAACTTTTTTAAAACACATAAAAGGAA
GAACTGAGGGTTTGATAAAGGTATAAGTGAATGTGAAGCGGCTCATACAT
TCCTGATTGAGAGGCAAATATATATTATCCATTTGATTTCATCAGTAGAA
ATGTCTTTTTAACTGAGATATGATTGGGAAAACCATCCTTATAGTTCTGC
CTCTCTTAAGTTCCCCTTTGTCAAGGTTTCCTCCCTGAACTTACTGTGGG
GAGCTATAGGTGGATAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_f23.g1 MSMg01no087_f23.g1 CHROMAT_FILE:
MSMg01no087_f23.g1 PHD_FILE: MSMg01no087_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:28 2005
         (289 letters)



>mm_chr14_69148133_69148821
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttaaaaataggcaacacctatgaacaactatgagccagcattattaggaattctcaac 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 488 acttaaaaataggcaacacctatgaacaactatgggccagcattattaggaattctcaac 429

                                                                       
Query: 61  aaacaaacaaacacaatgactcagacgctcatcaaatcactaataactaaaccagaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaacaaacaaacacaatgactcagacgctcatcaaatcactaataactaaaccagaggag 369

                                                                       
Query: 121 aagagctgtgccaatagtcatcaatgaaagagaacgttagaatcacactgttcattactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagagctgtgccaatagtcatcaatgaaagagaacgttagaatcacactgttcattactg 309

                                                                       
Query: 181 acagcatctacaactgataaacactactgttgggctatccaaccagagctgctattgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acagcatctacaactgataaacactactgttgggctatccaaccagagctgctattgaca 249

                                                           
Query: 241 gtgctgttagaatttctgaatctttgctcctttcttcatagcatcttg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtgctgttagaatttctgaatctttgctcctttcttcatagcatcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)