BAC Information

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BAC

Clone NameMSMg01-087K13
Chromosome14 (Build37)
Map Location 88,521,763 - 88,609,597
singlet/doubletdoublet
Overlap geneLOC100043780
Upstream geneDiap3, EG665324, Tdrd3, LOC100043317
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087K13.T7 (MSMg01no087_k13.b1)MSMg01-087K13.TJ (MSMg01no087_k13.g1)
ACCAG306628AG306629
length691687
length of high quality
(start - end)
193 (379 - 571)481 (73 - 553)
definitionCHROMAT_FILE: MSMg01no087_k13.b1 PHD_FILE: MSMg01no087_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:52 2005CHROMAT_FILE: MSMg01no087_k13.g1 PHD_FILE: MSMg01no087_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,609,405 - 88,609,597)(88,521,763 - 88,522,243)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAACGGAGCCGCGGA
ATTCAATATAGTTACAAAAACATGTAACTATTAAAAAGTCACCGAAACAC
ACATATTTATAAAGTAATATAACCTAAAAAGGTTAAAGGAAGTCTGAAAT
TATAATTACCTTTCACAAGGTCTAGAAAAGAGGAAAACCAATTCAGGTCA
TGGTTAAGTAGAATTAACTGGGTTTTCTTCTCTAATTCTTTTATTATTAT
GGTTAATGTTATCATCATTATTTTATTTCTGCTGATGTTTTACCAGTGTT
TTGTGCAAAACATACAATGTCAATAGTTGCTGGTTTAATTTACTGACAAT
CATCATTTATTGTTTTAGCACACATACACATACATAAACTGGACATGTTT
GTTCCCTTAGGCATAAAACCTTGCTCTAATTATATATACAACCTAAATAT
GTGTATAAGGCCCTTTAAGGCATACTTAAGCAATTGGTGACACATTTTAA
TCACTAGATGGAAACCAGAAAGAAAACTTTATAGACAAAACCAGCAATGC
TTCAGTCACAAACAAAATCTATAAAAAGTGGGTGGGGAGGAGGGAAAGGT
GGCAGGAATAGGTATTATCGTGAACTAGGCTGCTAGATCGAGAGTTATAC
CCCTTTTATTTTTTTTTTTAAACAGGCGAGTTTCCTTCCGC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTATCTTTAGGCTCTGAGGTCTGGAGG
TGGGGAATTGGTAATCAGAGTTCAGAAGATGATGTCTTTGAAAATGTCTC
AGGCTTTTCTTGCTCTCGTGTTGCTGTGGAAGTATGGGAGGATTTTTCAT
CCTGTTTTCCTATGTCAGATGAAGAGCCATTCATAGTAATTTAGAAACTT
ATTTTTAGCAGTTGAAAAAAAAAATCAGGGGACCCTGTCCAATGCTATAT
TCACATGAGGCACCTATAGCAATAGAAATTCACCTTCCATTTCCCCCATT
GTTTGGAGTTGATGAAGATCTGGCATTTATGTAGACATATGATTAATATA
ATTAGATGACCATGTATGGTAATAAAGTAGAGGAACTCACGAAGCCCTGT
CTGTTCTTTATGCCTTTGTGTCCTCAGAGATAAAAGCATTGTTTTCCTCC
CAGAACAGTGAGAATACTTCTGTATTTAGGTCTTTATAGCTTCTTTTATT
AGGTCAGAATTCAATGTGTTGAGAACTGAAAATCAGTGTTGACATTTCTT
TGACTTTTGGGGAGAGGAGCAGCAGACATTGACAGTGATCTTTTACTCTC
TGATTCGGCAGTATTTATGTCTTACTCCCTTTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_k13.b1 MSMg01no087_k13.b1 CHROMAT_FILE:
MSMg01no087_k13.b1 PHD_FILE: MSMg01no087_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:52 2005
         (193 letters)



>mm_chr14_88609205_88609797
          Length = 593

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacataaactggacatgtttgttcccttaggcataaaaccttgctctaattatatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catacataaactggacatgtttgttcccttaggcataaaaccttgctctaattatatata 334

                                                                       
Query: 61  caacctaaatatgtgtataaggccctttaaggcatacttaagcaattggtgacacatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caacctaaatatgtgtataaggccctttaaggcatacttaagcaattggtgacacatttt 274

                                                                       
Query: 121 aatcactagatggaaaccagaaagaaaactttatagacaaaaccagcaatgcttcagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aatcactagatggaaaccagaaagaaaactttatagacaaaaccagcaatgcttcagtca 214

                        
Query: 181 caaacaaaatcta 193
           |||||||||||||
Sbjct: 213 caaacaaaatcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_k13.g1 MSMg01no087_k13.g1 CHROMAT_FILE:
MSMg01no087_k13.g1 PHD_FILE: MSMg01no087_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:52 2005
         (481 letters)



>mm_chr14_88521563_88522443
          Length = 881

 Score =  930 bits (481), Expect = 0.0
 Identities = 481/481 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatctttaggctctgaggtctggaggtggggaattggtaatcagagttcagaagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatctttaggctctgaggtctggaggtggggaattggtaatcagagttcagaagatga 260

                                                                       
Query: 61  tgtctttgaaaatgtctcaggcttttcttgctctcgtgttgctgtggaagtatgggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctttgaaaatgtctcaggcttttcttgctctcgtgttgctgtggaagtatgggagga 320

                                                                       
Query: 121 tttttcatcctgttttcctatgtcagatgaagagccattcatagtaatttagaaacttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttcatcctgttttcctatgtcagatgaagagccattcatagtaatttagaaacttat 380

                                                                       
Query: 181 ttttagcagttgaaaaaaaaaatcaggggaccctgtccaatgctatattcacatgaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagcagttgaaaaaaaaaatcaggggaccctgtccaatgctatattcacatgaggca 440

                                                                       
Query: 241 cctatagcaatagaaattcaccttccatttcccccattgtttggagttgatgaagatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctatagcaatagaaattcaccttccatttcccccattgtttggagttgatgaagatctg 500

                                                                       
Query: 301 gcatttatgtagacatatgattaatataattagatgaccatgtatggtaataaagtagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatttatgtagacatatgattaatataattagatgaccatgtatggtaataaagtagag 560

                                                                       
Query: 361 gaactcacgaagccctgtctgttctttatgcctttgtgtcctcagagataaaagcattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaactcacgaagccctgtctgttctttatgcctttgtgtcctcagagataaaagcattgt 620

                                                                       
Query: 421 tttcctcccagaacagtgagaatacttctgtatttaggtctttatagcttcttttattag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcctcccagaacagtgagaatacttctgtatttaggtctttatagcttcttttattag 680

            
Query: 481 g 481
           |
Sbjct: 681 g 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)