BAC Information

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BAC

Clone NameMSMg01-087N23
Chromosome14 (Build37)
Map Location 73,766,216 - 73,766,471
singlet/doubletsinglet
Overlap geneItm2b
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5
Downstream geneLOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087N23.T7 (MSMg01no087_n23.b1)MSMg01-087N23.TJ (MSMg01no087_n23.g1)
ACCAG306777AG306778
length717735
length of high quality
(start - end)
256 (64 - 319)253 (70 - 322)
definitionCHROMAT_FILE: MSMg01no087_n23.b1 PHD_FILE: MSMg01no087_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:09 2005CHROMAT_FILE: MSMg01no087_n23.g1 PHD_FILE: MSMg01no087_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATCCGCGGAATTCAC
TGCGTCTCCCTCAAAGATCTTAATGTTCTCTTCAATTGTCTGGTAGCGAG
CAGCTGGGGCATCCGCAGAAGGCTCGTTCAGGATGACGTCATCTTTGATG
TACTTTAGTCCACAATAGTACACATCATCTGGCTGTGGAGTTGAAAACAC
TGTATCTCCGGCAATCCCGCATGCGGGAGACAGGCTTTTAAATGTAAGCC
TTACTTAAACTGCCACCCCTACCTAAATAGTATTTTGCTTACAAACTCTT
ACTTTCCAGATGACAAGTCAGACAGTTTAATTACAGAGCTAGCACATTCT
TTATCTTTTTCTGACGCTGCCCCCTAAAAAAAAAAAAAAAGCTTTTCCGC
TGATTTCCTCCTTATTCTCTGTGGTAGATAGGAACAGAATACGAAAGCTT
TCTGTTGTTAGGAAAATCTGAAGAAACGCGCAGTCCTGTTCCCACCTGGA
GGCATATTCCCACAGAACACAGTCAGAATCAGCGTTCTCCCTTCTTTCTA
GACCGGTTTTCAAGTATTACTACCCCCAGCTTAATTGGCACTGATGTAGC
GTGCCCACTCTCACACCCTAGTTCTCCCCCGCACGTCCCAACAGCACCCT
TACATCATATGCACCCCATGACCGAATTCACGCTTCCACCTATTTTGACA
CCCTTCCCCCCCTTCCG
TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGTGCCAGAGTTGGGGGGGTGGGGATACCC
AGGGGGACCTCCACGCACTCAGAACTCAGAGGAGAACGAGAAGGGGAACG
ATTGTTGGAGGGGTGACTGGAAGGGAGGCAGCGAGTGGCATGTAAAATGA
ATAAGTAAAAATTTTAATTTAATTATTTAAAAAGTCACATTCTCCCTTCT
CCCACTCTCTTCTTCCCTCTCTCTCCCAGAGGCCACCTCTGTACCCCATC
CCCTTTAATAACAATCCTCCCTCATGAGACTTGTCCCATGGCGTGACTTG
ATACCTATTTTTTTCTCCCCCCTCCCCCCGATTACGGGGTACCCAGTCCT
AAAGCATATATCATCTCATCAACAACAAACACAAAAACCTCAGGGAGCGT
CCTGTATTACGGTTCCGATCGACTGCCCTACCGTAATGCCTGCTTGCGAT
ATTGTCTCCCAAAAATCATACGACAGCTTCTAGTTACGTTCCCTCACCAT
TCTGGCCTGTCTCCACCACACCCTTATTTTTCTCTTTGTCGCTCCCCTTG
TACTTTAACACCGCCATTCTTAACGCCCCCCTACTTTTTCATCCACGATC
TGCCCCATACTTCCCCCTTGCTGTCCATATAACCCCTTCACCCCCCCTTC
CCCCCTTTATTATTCCCCCCCCTTTTGTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_n23.b1 MSMg01no087_n23.b1 CHROMAT_FILE:
MSMg01no087_n23.b1 PHD_FILE: MSMg01no087_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:09 2005
         (256 letters)



>mm_chr14_73766016_73766671
          Length = 656

 Score =  472 bits (244), Expect = e-137
 Identities = 253/256 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatcttaatgttctcttcaattgtctggtagcgagcagctggggcatccgcagaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagatcttaatgttctcttcaattgtctggtagcgagcagctggggcatccgcagaaggc 260

                                                                       
Query: 61  tcgttcaggatgacgtcatctttgatgtactttagtccacaatagtacacatcatctggc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tcgttcaggatgacgtcatctttgatgtactttagtccacagtagtacacatcatctggc 320

                                                                       
Query: 121 tgtggagttgaaaacactgtatctccggcaatcccgcatgcgggagacaggcttttaaat 180
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggagttgaaaacactgtattttcggcaatcccgcatgcgggagacaggcttttaaat 380

                                                                       
Query: 181 gtaagccttacttaaactgccacccctacctaaatagtattttgcttacaaactcttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaagccttacttaaactgccacccctacctaaatagtattttgcttacaaactcttact 440

                           
Query: 241 ttccagatgacaagtc 256
           ||||||||||||||||
Sbjct: 441 ttccagatgacaagtc 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)