BAC Information

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BAC

Clone NameMSMg01-090B05
Chromosome14 (Build37)
Map Location 82,521,854 - 82,522,166
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090B05.T7 (MSMg01no090_b05.b1)MSMg01-090B05.TJ (MSMg01no090_b05.g1)
ACCAG308404AG308405
length753744
length of high quality
(start - end)
317 (43 - 359)298 (69 - 366)
definitionCHROMAT_FILE: MSMg01no090_b05.b1 PHD_FILE: MSMg01no090_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:07 2005CHROMAT_FILE: MSMg01no090_b05.g1 PHD_FILE: MSMg01no090_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGTTAATTCCTCCCATTCATTCACCTTTTACTAAGTTGTCCTTTGA
GGTGATTAGTTCTAAGGCTATGTTTTCAACATGAGTTAGGACAGTAATGT
CACGTTCTAGACTAATATTCTTTCAATCTTCAGATCTTTGTGGCCCGCTT
GGTGACCTTTCTAGCTTTGTTTTTCTTCTTGTGCATGATTTTGATGACAT
GTGTAATTACTATCTATTGCTAATTATAAACAGTAAAATAACCTTGATGA
ACGTAACTCAGAGAAGCTATCGTTGCTTTTGAGCTTCTTTTGAACTGCAT
CAAACAAGGATTTTTTTTTACCCCCCTCCCCCCCCCCGGAGTCTTCCAGC
TTCTGACTAGGATCGTGATCAATCTCTCCAATTAGATCAGCATACTCGAG
AGTTATTTTGAGCTGCATGAAGTCCAGCACGCGAGCATGGTCAACCCTCG
TTTTATTTCTTGCGTTTTATGATAATCATCTATTCTCAGATATCATTTGC
TTCCCCTGGTGGGTCTCTTTTATCCGTCATCCTTCTTTTCGTGATCTCTT
GATTATCTTTTATGTATCCTCCGGCTGGTCTTTGTAAGTTCTAATATGTT
CCTTTGGTAATAATCTTACCCCTTTATATACTCCCACGCCCTTTCTAATT
AATTTATTTATCGTATCTTCACTGGCCAATTTTTACATTTTAACTTTTTT
TCG
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTAATGGCAGATAAGCC
CCTGAGAAAGAGGAACACTCCTCCACTGTTGGTGGGATTGCAAGCTTGTA
CAAGCAATCTGGAAATCAGTCTGGCGTTTCCTTAGAAAATTGGACATAGT
ACTACCTGAGGATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGATG
GCCCAACCCGTATGAAGGACACATGTTCCACTATGTTCATAGCAGCCTTA
TTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCCTCAACAGAGGA
ATGGATACAGAATATGTGGCACATCTACACAATGGAGTACTACTCAGCTA
TTAATTAGAATGAATTTATGATATTCCTAGCCAAATGGATGGATCTGGAG
GGCATCATCCTGAGCGAGGTAACCCAATCCATAGGAACTCACACTATATG
TACTCCCTGATAATTGGATATTTATCCATTTCTTAATAAACACTAGAAAT
AATATATCAATTTGCTTAATGGATGAAACTCCACATAAATGAATAACCTA
TTATTGACCCTGTGCCCCCTTCTTATAATTGGTTACCTATCCTCCATGGA
AGTGAAGTTCAGAGAAACACTTTTGTATTCTGCCATATAGGTATGAATCA
CCCAGAGACTGGCCTTTATTAGGGGATCTCTTCCATATAATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_b05.b1 MSMg01no090_b05.b1 CHROMAT_FILE:
MSMg01no090_b05.b1 PHD_FILE: MSMg01no090_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:07 2005
         (317 letters)



>mm_chr14_82521650_82522366
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgttaattcctcccattcattcaccttttactaagttgtcctttgaggtgat 64
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcattgttaattcctaccatttattcaccttttactaagttgtcctttgaggtgat 458

                                                                       
Query: 65  tagttctaaggctatgttttcaacatgagttaggacagtaatgtcacgttctagactaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tagttctaaggctatgttttcaacatgagttaggacagtaatgtcacgttctagactaat 398

                                                                       
Query: 125 attctttcaatcttcagatctttgtggcccgcttggtgacctttctagctttgtttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attctttcaatcttcagatctttgtggcccgcttggtgacctttctagctttgtttttct 338

                                                                       
Query: 185 tcttgtgcatgattttgatgacatgtgtaattactatctattgctaattataaacagtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcttgtgcatgattttgatgacatgtgtaattactatctattgctaattataaacagtaa 278

                                                                       
Query: 245 aataaccttgatgaacgtaactcagagaagctatcgttgcttttgagcttcttttgaact 304
           |||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||
Sbjct: 277 aataaccttgatgaacgtaactcagagaagctatcgatgcacatgagcttcttttgaact 218

                        
Query: 305 gcatcaaacaagg 317
           |||||||||||||
Sbjct: 217 gcatcaaacaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)