BAC Information

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BAC

Clone NameMSMg01-090J16
Chromosome14 (Build37)
Map Location 108,080,245 - 108,080,538
singlet/doubletsinglet
Overlap geneLOC668752
Upstream genenone
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090J16.T7 (MSMg01no090_j16.b1)MSMg01-090J16.TJ (MSMg01no090_j16.g1)
ACCAG308791AG308792
length691693
length of high quality
(start - end)
542 (38 - 579)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no090_j16.b1 PHD_FILE: MSMg01no090_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:48 2005CHROMAT_FILE: MSMg01no090_j16.g1 PHD_FILE: MSMg01no090_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
ATACTAATTTCTAGAAACTATTTGACTTGCATTACCAATTGAAAAATACT
GTAGGTGACTGTCTTAAGCTGGGACCAGCCAGGAACACACAGAGCACAGG
AACAGTGGAACATCTGTGACAGTGTACTTCCTGCCTCTATCTGCACCCAG
GAGTTGGGGCTGTTCCACAGTCCTCTGTGTACTGGTTCTCTCAGGGGAGA
GCTGGTCTCTAAGGAGTGCTGACACAGGCTTAAAGGCCCACAGAAGGGAC
AAGCTCAAGCCAGAGACAGCAAGACTAACTAATACCAGAAATAAACAGAT
GGCAAAAGGCAAGTAGAAGTACTTTACCAACAGAAACCAAGTCTATATGT
TATCATCAGAACTCAGTTCTCCCACAACAGCAAGTCTTGGATACCCCAAC
ACACCTGAAAAGCTAGATTTGGATTTAAAATAGAACCTCATGATGCTGAT
AGAGGACTTTAAGTAGGTCATAGATAAATACCTTAAAGGAATACAGGCAA
ACACAGATAAACAGGTAGAAGCCCTTAAAAGAGGAAACACAAAACTCCCT
TAAAGGAAAACACAAACAAGCAGGTGAAGGAATTGAAAAAAAAACATCCA
GGATCTAAAAATTGGAAGTAGAAACAATAAAGAAGGCCCAT
ATCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAAAGGAGAAACCAAAGTAACCAT
TTCAAATAGCTGCTATTCATTCTTCCCACCAACAAATAAGCAAACAGGAA
CATACTATAAACATAATCACAAAATGAATTATCATTTGCTAGTCAAATGT
TTTAATTTTAAAAAGCCTTGGTACAAATTCAACAATGGGAAATGAAATGT
GAATTAGTACATTACATATTGTAAACATTAAAAATTTAACCTTAGGGACT
TTTCTGGATAAGCCATACATAGCTCTACCCATTGTTATTTTATTTGCACT
TGTATTTGATTCCTCTGGTATCTTTCCCTCTTGTCCCTACTTTAACATCC
ATTCTGGCTTTCATAAAATAATTTGGCTTTTACTACTAATTATGTAGTTA
AAAATAGGGCTGATTACTTAGTATTAGTAAGATAATGACTGTGAGGGGGT
TTAATGCACTTTTCTAATTCATTCTTTATTATTTGTGGAGGGAGTTCTGA
CACCTTCCACATGCAAATCAACTTCAGAAGCACTTAGCCATGTAAATAAA
TATGCTGAAAGCATTATTTTGAAATTTTGAAAATCATACCTGCTTTCAAA
AACAAGTAGAAAATGGTGAAAATTACCTATTCATATCATCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_j16.g1 MSMg01no090_j16.g1 CHROMAT_FILE:
MSMg01no090_j16.g1 PHD_FILE: MSMg01no090_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:49 2005
         (294 letters)



>mm_chr14_108080045_108080738
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaggagaaaccaaagtaaccatttcaaatagctgctattcattcttcccaccaacaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 taaaaggagaaaccaaagtaaccatttcaaaaagctgctattcattcttcccaccaacaa 260

                                                                       
Query: 61  ataagcaaacaggaacatactataaacataatcacaaaatgaattatcatttgctagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagcaaacaggaacatactataaacataatcacaaaatgaattatcatttgctagtca 320

                                                                       
Query: 121 aatgttttaattttaaaaagccttggtacaaattcaacaatgggaaatgaaatgtgaatt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aatgttttaattttaaaaagccttggtacaaattcaacaatggggaatgaaatgtgaatt 380

                                                                       
Query: 181 agtacattacatattgtaaacattaaaaatttaaccttagggacttttctggataagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtacattacatattgtaaacattaaaaatttaaccttagggacttttctggataagcca 440

                                                                 
Query: 241 tacatagctctacccattgttattttatttgcacttgtatttgattcctctggt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatagctctacccattgttattttatttgcacttgtatttgattcctctggt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)