BAC Information

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BAC

Clone NameMSMg01-091L04
Chromosome14 (Build37)
Map Location 91,464,904 - 91,465,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091L04.T7 (MSMg01no091_l04.b1)MSMg01-091L04.TJ (MSMg01no091_l04.g1)
ACCAG309578AG309579
length1,056739
length of high quality
(start - end)
---102 (139 - 240)
definitionCHROMAT_FILE: MSMg01no091_l04.b1 PHD_FILE: MSMg01no091_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:18 2005CHROMAT_FILE: MSMg01no091_l04.g1 PHD_FILE: MSMg01no091_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCTTTTATATAATTAATACTTTTCATTANCTCNNNCACACCTGAT
CATTTTACAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCNGGAATTCATTCCATCTATCCCACACCAAACCCTGTAT
GTTAGTTATTGTCTGATGCCATGTAATCTCTTTCCTGATAGGCATCCTCG
GCACAGATTGTTCTCTGTAGAGGATCTTACTCAGCAATACTTCAATCTTC
ATGTCGCAATACTTCTATATTCTACATTATCAATATCTTTCTCACACTAT
CGTATCACATACATCATCAAAATATATACAGCAATCGCTTCGATTATCAT
ATCATGTTGACTAATACCACAAACAATACACTAACTGTGATAATATACTT
TCGACCATCTACTTCACCATGAACTATACCCTCTCTATCATTACATATAT
ATTCGTAACCCTACTCACATATCTACTTGCACGTCTTTACCAACACTCTC
AATACACCTTCCCTTCTCTACTAAAATGCACTCACGCTTCCGACATGAAC
CACTACTAATATCTACCTTCTCTGTATTCGACATTAACCAACAACTACTA
CATCCTCCTCTTACTATTGACCATTCTTATATAATCTCCCACAAATGATC
ATACTATTTCTACACTCTCATCCATCGATCGTAACCCACCATGTGCTTTT
CATTGTACACGCCTTTCATTTAACTTTTGTATTTTATACCTCTTTTCTTC
ACTTTCCTTATACTATCCTTATTTCTCTCTTATTGTTCGCTTCAGCTTGT
ATACTCTCTCTTACTTTGTTTCAATGTACTTACCATATTCACCACCCACC
CAACTCCTCATCAACCCTATACTTATTCATTCTTTTATTTGCACGCCTAC
TTTTATACCACCTCTCTATACCTTCTTCGCTTCCTTACATACCAAATTAT
TTCCACTTTTCTGGTTACCCTGGCCCCGCTTCCTGCTTTATATAACCATA
TTCACCACCGTCCCATTTCGTTTATGTTTACGCCCGCTCGTGCATCCCTC
TCTTTT
TTTTTTTTCAATATAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTTAAAATTATCAATTA
TTCTCAATCAGAAAGTGAAGAGAATAACTGACTTTTAGTTCACCTCTATG
ATTGTTCTGATTTGTTTGTTTGTTTTTATTATTTCTTTAATGTTCTACAC
ATTTTATCAGAATTTTAAAACATAAACATTTTTGTAAAAAATAAGAGAAA
ATCTTTCATCTATTTTCCATCTTAAAAACTGCATGATGAGAAGAAAACAA
TTAAAAGAACAATTTCATATCCATAGTATCATCATCTTGTAAAGAAAACA
TATGGCAAATTTAGTTTCTTATTTCACCCCCAATGTTAGTTTGAATTTTA
TAAAGTATCAACTTACCTAGAAAAGAAGAACAAAAACTTCATCAGTGAAA
TCCATAATAATCACATTGCTTCAACTGCCTCTCATTTATTACTATGACCG
TAAGATGTCTCCTACTGTTATCAAATGTTTAATGTTACCTGCTGCATGTT
GTGTATAATGAACTATGTTTCATGTCTAAAACCTTCGCTTATGCAACTAT
TTCTTACTCCCTTATCGCTTATTGCCCAAATCCTGCCCTGATTCTCAAAA
TCTCCCTAATCCCTCTGTTCCCTTTATTCCAACATCGTCCCTGCCAATCT
ATAGTTTCAAAATTTTGCTCACTCTAATTTGCCCTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_l04.g1 MSMg01no091_l04.g1 CHROMAT_FILE:
MSMg01no091_l04.g1 PHD_FILE: MSMg01no091_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:18 2005
         (102 letters)



>mm_chr14_91464704_91465205
          Length = 502

 Score =  197 bits (102), Expect = 1e-55
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcacctctatgattgttctgatttgtttgtttgtttttattatttctttaatgttctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacctctatgattgttctgatttgtttgtttgtttttattatttctttaatgttctac 260

                                                     
Query: 61  acattttatcagaattttaaaacataaacatttttgtaaaaa 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattttatcagaattttaaaacataaacatttttgtaaaaa 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)