BAC Information

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BAC

Clone NameMSMg01-091L21
Chromosome14 (Build37)
Map Location 15,542,143 - 15,542,551
singlet/doubletsinglet
Overlap geneSlc4a7
Upstream geneEG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147
Downstream geneNek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091L21.T7 (MSMg01no091_l21.b1)MSMg01-091L21.TJ (MSMg01no091_l21.g1)
ACCAG309612AG309613
length717717
length of high quality
(start - end)
344 (41 - 384)408 (71 - 478)
definitionCHROMAT_FILE: MSMg01no091_l21.b1 PHD_FILE: MSMg01no091_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:21 2005CHROMAT_FILE: MSMg01no091_l21.g1 PHD_FILE: MSMg01no091_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAATTC
CATCATATGTACTCACTGATAAGTGGTTATTAGCCCAGAAACTTAGAATA
CCCAAGATATAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGG
AAGACCAAAATGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACA
CCCATGGAAGGAGTTACAAAGACAAAATTTGGAGCTGTGACCAAAGCATG
GACCATCTAGAGACTGCCATACCGGGGGATCCATCCCATAATCAGCCTCC
AAAGGCTGACACCATTGCATACACTGTCAAGATTTTGCTGAAAAAACCCT
GATATAGCTGTCTCTCGTGAGGCTATGCCGGGGCCTAGCAAAAACAGAAG
TGGATGCTCTCAGTCCCCTATTGGATGGATCACAGGTTCCCCAGTGTAGG
AGCTAGAGTTAGTATCCAAGGAGCTAAAGGGATCTACAACCCTATAGGTG
GAACAACATGCACTAACCAGTACCCCCCAGAGCTCATGTCTCTAGTTGCA
TATGTATCACAAGATGACCCAGTTGGTCCTCCTTGTAAAGAGAGGNCCCC
TGGACATGTAACCTTTACACGCCCAGTACCGCGGAACGCCATGGCCCACA
CGTGGTAGCGCCCGGCTAGGTAGCTGCTACAAATCTAACCCCCCCTCCCT
CCTTCTTAATTTTTCTC
TCATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGTGCGATTTCATGTAAAGCTATTTGTAT
CTCTCCCAGAAAAACAAACAAACAACTGTTTGGGGGTGATTCCTAAGTCC
CCAGGTGCCACACCATACATACCTCTATTTTTAAATCAATTTTAAATACA
TGCTGTATTAGGAGGTGCCATTAATATTTTGTATACTAGGACAGAATCCA
GAATTCTTTTCATTTAACACTAATGAAAAAACAGCAAAAAGTTCACTGAG
GTTCTGAGTCAAAACAAATGAACTGACTCACAAGAGTCACCTTTCACAAT
TAGTAATTAAGAAAACAGCTATGGAAACTGTTAGGGTGGTTAATTTTCAT
ACAGGCATCTTTTTCACAAAATAAATATATCACATTCTCACAAAACAAAA
ATTTCGTCTTTAAATTCATTTCATACAATATAAAAATCAAGACTTTTTTT
TTCTTAAGGGCTTTACTACATGCACTAACTGTGGACTTGTGGATTAAAGC
TAACGCCCTGTATCAGCTTTTCAGTAAGCTCCCTCACAAGCATGCCGCAA
GACTCAACACAAGCCCGCCATAAGACTTCTCATTCGCATGCCCTAAGACC
CTACTTCCAGGAGCCTTCCGACACGAAGGAACCCTACCTTTCCTAAAAGT
TGCTGCTACGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_l21.g1 MSMg01no091_l21.g1 CHROMAT_FILE:
MSMg01no091_l21.g1 PHD_FILE: MSMg01no091_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:21 2005
         (408 letters)



>mm_chr14_15541943_15542751
          Length = 809

 Score =  768 bits (397), Expect = 0.0
 Identities = 406/409 (99%), Gaps = 1/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgcgatttc-atgtaaagctatttgtatctctcccagaaaaacaaacaaacaactgt 59
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctgtgcgatttcaatgtaaagctatttgtatctctcccagaaaaacaaacaaacaactgt 550

                                                                       
Query: 60  ttgggggtgattcctaagtccccaggtgccacaccatacatacctctatttttaaatcaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgggggtgattcctaagtccccaggtgccacaccatacatacctctatttttaaatcaa 490

                                                                       
Query: 120 ttttaaatacatgctgtattaggaggtgccattaatattttgtatactaggacagaatcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttttaaatacatgctgtattaggaggtgccattaatattttgtatactaggacagaatcc 430

                                                                       
Query: 180 agaattcttttcatttaacactaatgaaaaaacagcaaaaagttcactgaggttctgagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agaattcttttcatttaacactaatgaaaaaacagcaaaaagttcactgaggttctgagt 370

                                                                       
Query: 240 caaaacaaatgaactgactcacaagagtcacctttcacaattagtaattaagaaaacagc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caaaacaaatgaactgactcacaagagtcacctttcacaattagtaattaagaaaacagc 310

                                                                       
Query: 300 tatggaaactgttagggtggttaattttcatacaggcatctttttcacaaaataaatata 359
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 309 tatggaaactgttagggtggttaattttcatacaggcatcttttttaaaaaataaatata 250

                                                            
Query: 360 tcacattctcacaaaacaaaaatttcgtctttaaattcatttcatacaa 408
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcacattctcacaaaacaaaaatttcgtctttaaattcatttcatacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)