BAC Information

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BAC

Clone NameMSMg01-092B23
Chromosome14 (Build37)
Map Location 70,313,820 - 70,401,716
singlet/doubletdoublet
Overlap gene1700081D17Rik, LOC668397
Upstream geneLOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701
Downstream geneEgr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092B23.T7 (MSMg01no092_b23.b1)MSMg01-092B23.TJ (MSMg01no092_b23.g1)
ACCAG309887AG309888
length690691
length of high quality
(start - end)
229 (136 - 364)235 (135 - 369)
definitionCHROMAT_FILE: MSMg01no092_b23.b1 PHD_FILE: MSMg01no092_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:52 2005CHROMAT_FILE: MSMg01no092_b23.g1 PHD_FILE: MSMg01no092_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,313,820 - 70,314,048)(70,401,486 - 70,401,716)
sequence
TTTTTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAACCAATGTCTTCTTTCCTCCTCCCATGACAACCTAAA
ATTCAATTCCACCCCAGTCCATTTGCACCCCATACGTGAAGGGTTATTTG
CAGGAGCTTGGTCGACCTCAAAGCAGCCACACTGTTAAAGTCTTCAACCA
GCATGAATGGTGGCTTCTCCTCGGTCACATAAGAGAGAGCCTTCTTGAGC
TAGCTTTCTCTAACTTAAATACTCTCGGACCTCCACAACCAGAGCCGAGT
GTAATTAGGGAAAAATTGCACCCACAAGGCAAGGAAGATTGGCTCAGGGT
TGGGTTCCCATACCTACTCATCCTCTTTTACGCAGGAGTGACCAGTATGC
TCCTGACAGTCTCCTGCAAATGGACTCAGCTGATCTGATTGAGATGTGGA
TGTTTTGCTTGGAGGTTCTTCAGGCAAAGATGAGGTCAGGCAGGCTCAGA
TCCTGGTTTCATTACCCATCTTTGGAACCCTTGGTTTTTTCCACCTGTAT
TATGTGTATGCCCTATACGCCATGGTGAACATACTGTGGCAGATACCCCT
TTAGCACTTAGCCCATATGCAGCCTTACAAAAATGTTAACTTGGCCATGC
TTACTTGTAACTAACGTGCCAAGAACACTTCCAATTATAC
TTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATTAAATATGCAGCCTATTTGTCT
GTGTGTGGGAGAGGGTTTGCTCCAGGGAGGGGTATGGAGTCAGCGTCTCT
GCGGCATACCAGCAAACCAGAAATTAGCTCCGTTCATCACAGGCACACGG
GGCTTCCCTCAACCCTCCTGTGCACTCGCAGGAGTCGCAAGAAGGAGACA
GACAGAGGAAGCTAGAGAGAGGTTGGGGAGGCGGGTTCCCGGCTGGAAGG
GCTTCCGGAATTTCTGAGTGGGCAGGAAGGATTGCCCGATTCCTTGGCTC
TTGGGGGTTTTTCCGCATGCTGGTAGCAGAGTTCCACTGGGGCATCTGTC
CCAGCTAGGATGGCCAGGGTGGTCTGCGCTCACTCCTGGGATGGCCTCTG
ACATACGTGGAGGAGAACCATACTGCAGACATGGCAGCTCCCTCTAGTCT
AGGCAAGCTACCCCCTCCCCTTTCTATTCCGCCAAGGCATGTGGTGAGTC
TCAGGTGGGACAGTGATTTCTCTGTAAAGTAAACCCCTAACAAGTCGCGT
TTGAGGTTCCTGCACAGGTATTTTGGGGGTACACAGGTCCCCCGAAACTG
TTGCGAGACGTTCTCCCCCCCGCCCCTCGGCTCTTCTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_b23.b1 MSMg01no092_b23.b1 CHROMAT_FILE:
MSMg01no092_b23.b1 PHD_FILE: MSMg01no092_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:52 2005
         (229 letters)



>mm_chr14_70313620_70314248
          Length = 629

 Score =  412 bits (213), Expect = e-120
 Identities = 225/229 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaagggttatttgcaggagcttggtcgacctcaaagcagccacactgttaaagtcttc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaggggttatttgcaggagcttggtcgacctcaaagcagccacactgttaaagtcttc 260

                                                                       
Query: 61  aaccagcatgaatggtggcttctcctcggtcacataagagagagccttcttgagctagct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaccagcatgaatggtggcttctcctcggtcacataagagagagccttcttgagttagct 320

                                                                       
Query: 121 ttctctaacttaaatactctcggacctccacaaccagagccgagtgtaattagggaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctaacttaaatactctcggacctccacaaccagagccgagtgtaattagggaaaaa 380

                                                            
Query: 181 ttgcacccacaaggcaaggaagattggctcagggttgggttcccatacc 229
           ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ttgcacccacacggcaaggaagattggctcagggttgggctcccatacc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no092_b23.g1 MSMg01no092_b23.g1 CHROMAT_FILE:
MSMg01no092_b23.g1 PHD_FILE: MSMg01no092_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:52 2005
         (235 letters)



>mm_chr14_70401286_70401920
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagtcagcgtctctgcggcataccagcaaaccagaaattagctccgttcatcacaggc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tggaggcagcgtctctgcggcataccagcaaaccagaaattagctccgttcatcacaggc 372

                                                                       
Query: 61  acacggggcttccctcaaccctcctgtgcactcgcaggagtcgcaagaaggagacagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acacggggcttccctcaaccctcctgtgcactcgcaggagtcgcaagaaggagacagaca 312

                                                                       
Query: 121 gaggaagctagagagaggttggggaggcgggttcccggctggaagggcttccggaatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaggaagctagagagaggttggggaggcgggttcccggctggaagggcttccggaatttc 252

                                                              
Query: 181 tgagtgggcaggaaggattgcccgattccttggctcttgggggtttttccg 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgagtgggcaggaaggattgcccgattccttggctcttgggggtttttccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)