BAC Information

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BAC

Clone NameMSMg01-092D08
Chromosome14 (Build37)
Map Location 53,031,166 - 53,031,476
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638695, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510
Downstream geneOTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092D08.T7 (MSMg01no092_d08.b1)MSMg01-092D08.TJ (MSMg01no092_d08.g1)
ACCAG309953AG309954
length760777
length of high quality
(start - end)		312 (105 - 416)48 (131 - 178)
definitionCHROMAT_FILE: MSMg01no092_d08.b1 PHD_FILE: MSMg01no092_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:59 2005CHROMAT_FILE: MSMg01no092_d08.g1 PHD_FILE: MSMg01no092_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCACTAACT
CACTAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTCTGATCTATTGATGATAATGATATACACCTTTTCAA
TAACTATCTTACTCTATTTACATATTCTCCTTCCTCATCAATCTTTCCAT
TATTCAAGTGCTAGTGAATTAAAAGTGATAAATAATTCAATCTCGCTTGT
TGGACCCTTCTACTTCTTTGAGGCCAAAGTCAGTCTTTGGGATTATACAA
TATGGATCTAGTTTCATGATAACAAATTCTAACGATCATTCATGCTCTTT
AGTATTTCAGAATATTGTTTCATTTTATTGATTTATATGTCTATTGATTT
AGATTGAATTTTGTAAAATTGCAGAATTGCCAAGGAACTTTTTATTGTGT
GTTATAAAAGTATTGACCAGCACATGGATGTTAGAAAGCTTGTGCATGTA
TATACACATAAGTTTCTGTTTGCCATCTAGGATCTCTTTCTAACGAAAGT
TATAGATTTCAAATATCTGAATTTTCCAGGCCACAAGGAAATGTTTTCAT
AACTGCTTCTTTGTTTAATAAAAATTCAACATTTAGGATTCTCTAAAAAT
AAATTCCTTTCAGGAACATAAGGTATAAAGCAAATATGTTTATTAATTTA
TGATTTATATATTTTTTCTCTCTCTTAATTTTAATTGTTATATATTTAAT
TCCTCTAATG

NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNCCCCACTCC
CACCACTCAATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTACTAACTCTTTCAT
GAATAATACTACAACCCACCTATTTCCTACCCCATTGTGTATTCCTGTGT
ATGGGTGTGACTCGGCTATTGTTCTTTTTTTTCCATTTTTTATTAGGTAT
TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACA
CACCCCAAATCCCCTACCCACCCACTCCCCTTTTTGGTCCTGGAGTTCCC
CTGTACTGTCACATATAAAGTTTGCGAGTCTAATGGGCTTCTCTTTCCAG
AGATGGCCGACTAGGCTTTTTCTCCTTCTTCTCCTCAACAATAAACTATC
TTTAATTTTGAAACACTTTTACAAACACTACAATAAATTTCCAATTTTTT
ATCAGTAATAAAATAAATTTACATTCTCCCAAGCTTTTATAAATATATCC
TCATTTCCCCTCTCCTCCCTCTTTTCTTGTTACATTATCATTACATATTA
TAGATATATGCTTCTCCCCTTGCACTTGTTCTTATTATTACTTTTTTTAA
CCCATATGTTAACTCTACTTTATCATTCATATGATATAAAAACTTCACAC
TTCTCACCATTATATCCTTACTTAATATCATTAATATTATTATCACATTC
TTTTTATTATATAATTTCGCCGCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_d08.b1 MSMg01no092_d08.b1 CHROMAT_FILE:
MSMg01no092_d08.b1 PHD_FILE: MSMg01no092_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:59 2005
         (312 letters)



>mm_chr14_53030966_53031676
          Length = 711

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcttttctgatctattgatgataatgatatacaccttttcaataactatcttactc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcttttctgat-tattgatgataatgatatacaccttttcaataactatcttactc 259

                                                                       
Query: 61  tatttacatattctccttcctcatcaatctttccattattcaagtgctagtgaattaaaa 120
           |||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatttacatagtctaattcctcatcaatctttccattattcaagtgctagtgaattaaaa 319

                                                                       
Query: 121 gtgataaataattcaatctcgcttgttggacccttctacttctttgaggccaaagtcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgataaataattcaatctcgcttgttggacccttctacttctttgaggccaaagtcagt 379

                                                                       
Query: 181 ctttgggattatacaatatggatctagtttcatgataacaaattctaacgatcattcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttgggattatacaatatggatctagtttcatgataacaaattctaacgatcattcatg 439

                                                                       
Query: 241 ctctttagtatttcagaatattgtttcattttattgatttatatgtctattgatttagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctctttagtatttcagaatattgtttcattttattgatttatatgtctattgatttagat 499

                       
Query: 301 tgaattttgtaa 312
           ||||||||||||
Sbjct: 500 tgaattttgtaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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