BAC Information

Click to search

BAC

Clone NameMSMg01-092F07
Chromosome14 (Build37)
Map Location 111,917,219 - 111,917,456
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092F07.T7 (MSMg01no092_f07.b1)MSMg01-092F07.TJ (MSMg01no092_f07.g1)
ACCAG310046AG310047
length721722
length of high quality
(start - end)
230 (133 - 362)238 (121 - 358)
definitionCHROMAT_FILE: MSMg01no092_f07.b1 PHD_FILE: MSMg01no092_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:09 2005CHROMAT_FILE: MSMg01no092_f07.g1 PHD_FILE: MSMg01no092_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGCAGAATTATTACAAATCAATGATGTTCTGCTCTTTTAAGGATGT
TACTCTAAGAAAAGTGTAAGCCTTGACGGGCAGCAAAGCAAATGCAATGT
GCTTTATCAGTGGCCTAAAGAATTGAATTTGAGGAGCTGGAGAGATGGCT
CAGTGGTTAAGAGCACTGGCTGCTCTTTCAGAGGTCATGAACTCAATTCC
CAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGACCCGATGCCCT
CTTCTTATGTGTCTGAAGACAGCTACAGTGTACTAATAAGTAAAATAATT
ACTTATTTTATATTTTGTCTTACACCCCCCATTAAATTTGGATGGAAAAC
AATCCTTTATTTTTCCCATTGTTCAAATTCATGGATACATTACCTTGATA
AGCAGTATTCAATATGTGTAACTTACACAATTACTTGTTGGCCGTGAAGT
AAGTTATAACACCATGCTTGAGATTGTAAAGAATGTAGTTAATAAGACCA
AAGTAACACAATCTTTGCTAATTTATCCTTACGTGTAAGTACTCTCTATG
TGAACAATTTAGCGACCGCGCTTTCTTGATACCTATTGCCTGGTCCCTGC
ATCACTTACACCACTCCCCCATAACACCCCTATTTACCCCCACCAAGTCC
CCACGACCTCCCCCTTTCGTT
AATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGAAGTCTTGTTGAGGCAAGCATTTCTTT
TCATTGTCCCTAACTGACTTTATGCAGACTTAAGGATACAGATAGGGAAG
GGACATCATATGTGTGTGTCCTTCAACTCCTTTAGAAAATCAACAAAGTA
ATATAGGTATGGATTATTTTGACATTTAAAGCAAATAGATTAAGGGAAAT
AAAACAAATATATCATATTGACAAATATTGGTAGATTTAGAATTATAAAT
ATTTATTTTCTAAATAACTATTCCCGTCCAAGAAATTAGAAGAATTTCTA
CTGGTTTGAGATCAACCTGTGATTTCCAGTGAGATTTAAGCCAGTCATAA
AGTAAGCCTGTGCATCACTAATAAACAGAAAATTGTTTCTCTTTATAGCT
TTTATATTTTGCTAGAGCCAGATTTTGTTCAACATTCCAAACACCTTCCT
GTAATGACTTATGATATGGAAGGTATTTTCACTCTTGTCTTCAGTCATTC
ACGATATACAAGGCCCTTTGTAGAACAGCCCCCCCAGATGACTAGATTTA
AAACATTAATCCCACATTTCTCGGTCACATTCTTACCTCTAATAAGATGA
CCGCGAAAATTTGAAAAATAATTGAGGCTCATTTCTTCAGGTAAGCAACT
TTTTAAAAGGAAACATAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_f07.g1 MSMg01no092_f07.g1 CHROMAT_FILE:
MSMg01no092_f07.g1 PHD_FILE: MSMg01no092_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:09 2005
         (238 letters)



>mm_chr14_111917019_111917656
          Length = 638

 Score =  414 bits (214), Expect = e-120
 Identities = 232/238 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgcagacttaaggatacagatagggaagggacatcatatgtgtgtgtccttcaactcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tatgcagacttaaggatacagatagggaagggacatcatatgtatgtgtccttcaactcc 260

                                                                       
Query: 61  tttagaaaatcaacaaagtaatataggtatggattattttgacatttaaagcaaatagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagaaaatcaacaaagtaatataggtatggattattttgacatttaaagcaaatagat 320

                                                                       
Query: 121 taagggaaataaaacaaatatatcatattgacaaatattggtagatttagaattataaat 180
           || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 321 taggggaaataaaacaaatatatcatattgactaatattggaagatttagaattataaat 380

                                                                     
Query: 181 atttattttctaaataactattcccgtccaagaaattagaagaatttctactggtttg 238
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttattttctaaataactaagcccgtccaagaaattagaagaatttctactggtttg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)