BAC Information

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BAC

Clone NameMSMg01-092O01
Chromosome14 (Build37)
Map Location 106,910,664 - 106,910,810
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Downstream geneLOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092O01.T7 (MSMg01no092_o01.b1)MSMg01-092O01.TJ (MSMg01no092_o01.g1)
ACCAG310459AG310460
length774801
length of high quality
(start - end)
147 (210 - 356)75 (136 - 210)
definitionCHROMAT_FILE: MSMg01no092_o01.b1 PHD_FILE: MSMg01no092_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:53 2005CHROMAT_FILE: MSMg01no092_o01.g1 PHD_FILE: MSMg01no092_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTCTNTTTTTTCCTTTTTTTTCTCTTTCTTTCTTCTCCCCCAAC
ACNTCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAAACGTAATAAGGAAATTTGTATTTTTGATAACTC
GTTCATGTGATAATTTGTCTGAGTGATAATTCGCGGGTGCATTCGCGATT
TTGGAATCGGACATGCACTGCTGTTGCACAAAGCAGTTTCTGCATTTTCC
CTCCACCATTTTTCACAATTGCTCATATGAGACAAGGCTTGTTTTCAGCC
ACTCTGCTGAGACTGTTCATCATTTTGACTGGAATGCCACTGCATACGTC
CTGTCACAGAACACAGCTGCACAAGCACCTTTGCTGGCAAGTCGCTGCTG
ACTTGGCAGCATTTCATTTTATTTCTTCTCTGTCATTGTGCACCCTTCAA
GACTCTTCTCTAGAATACTATACAGACTTTTGCCTTTTAGAAAGTCTTCC
CTTTGAGCTTAAACTAACTCTGCAATTCGCTATCCTCCTTCTACCTTCCA
CATGGTATGATCATTAGTCGTCTTAATGACACTTACCCCCTCATCAAGAA
ACATTTTTCACCCTCTTTTCTCAACAATACTTTTTATCCATACATTCTCA
CTCTGCCTTCCTTCCCCTGACCCCATGTGAATCTATATTGCTCTGTAACT
AATCAATCTCTCCTCTTTCACCATTATCCATCTTGTACTAAACAAATGAC
TCTCACCCTACTCCATTTTAATAT
CCTTTTCTCCNNNCCCCTTTTTTTNNTCTTCTCTTTTTCCCTCCTCTCTC
CCTCCTCTGCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCAGGAAAAGTA
CACTATCTCATAGGAGGGATATTATTCTTTCTACCTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTCTTTTTGCGCAGCTTAAGAGAGATTAAGCTTTCGAA
AGAAAGGAAGGAAAATGGGGTTTCTCTCATTGGAGAAACTTTGGGTACTT
GGTCCTAGCTGGCAAAAAACCCACTTTCCCATTTTGGTTCTCCTCATTGA
GGATTTTCCAGTCCTTATAGGATTTTCCTCCTATAATGATTTTTTTTTCT
CTTGGGAAATTATCTTAAGTATATCTTGGAATTCGAGTTCATTTTTGAAG
TCTCGATTATAATGCTTTTCTTTATGGATCCGCTCCTACCTTGGCCGGGT
CGCCCCCGAGTTTTTTTTTTTGATCTGGCAGGCATTTATGAATCCCCCTG
CGATGCCGTTCTCTTTATTTGCATAAATACCCACGGTCTACCATCATACT
CTGGAATATAAAATTCCCTGCAACACCTTGGTTTTGCTCCTTTCATCCGG
GTCTAGGAAAAAACCCTTGTGGGGTTCTTCATAGAAAGGCCCCCCATCAC
TTTTCCCAATACCGGCTGCTTTTCCTCTTCCCTTTTATTCTTTGGATTAA
CAACGTGCCCCTTCTGAGTTTGGTGTTCCCCTTTTGACATTTTTTCCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_o01.b1 MSMg01no092_o01.b1 CHROMAT_FILE:
MSMg01no092_o01.b1 PHD_FILE: MSMg01no092_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:53 2005
         (147 letters)



>mm_chr14_106910464_106911010
          Length = 547

 Score =  253 bits (131), Expect = 3e-72
 Identities = 143/147 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacatgcactgctgttgcacaaagcagtttctgcattttccctccaccatttttcacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gacatgcactgctgttgcacaaagcagtttctgcattttccctccaccatttttcacaat 288

                                                                       
Query: 61  tgctcatatgagacaaggcttgttttcagccactctgctgagactgttcatcattttgac 120
           |||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct: 287 tgctcacatgagacaaggcttgtttccagcccctctgctgagactgttcattattttgac 228

                                      
Query: 121 tggaatgccactgcatacgtcctgtca 147
           |||||||||||||||||||||||||||
Sbjct: 227 tggaatgccactgcatacgtcctgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)