BAC Information

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BAC

Clone NameMSMg01-092O14
Chromosome14 (Build37)
Map Location 102,653,747 - 102,654,106
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092O14.T7 (MSMg01no092_o14.b1)MSMg01-092O14.TJ (MSMg01no092_o14.g1)
ACCAG310485AG310486
length694692
length of high quality
(start - end)
364 (42 - 405)292 (122 - 413)
definitionCHROMAT_FILE: MSMg01no092_o14.b1 PHD_FILE: MSMg01no092_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:56 2005CHROMAT_FILE: MSMg01no092_o14.g1 PHD_FILE: MSMg01no092_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACATCTTGACCTGCAGGTAGCAGAAGGGGACTGTCTACATCCTGGGTA
TAGCTTGAGCATTGGCACCCTCAAAGCCTTGTCCCCACAGTGACATACTT
CCTCCAACAAGGCCACATGTACTCCAACAAGGCCTGACTTCCTAATAGTA
ACACTTCCCACGGACCAACCATTCAAACACATGAGTGTATGGGGGGGGGC
AAACTTATTCAGACCACCATAGTCATTCAATACCTTTAAAAACACATACA
GGTAATATATAATACAGACTGAACTGGTTTTATTTATGAAATTGTATAAA
TGTGTCATATATATAAACAACTATTCATGAATAAAAGAGGTCACGAGTGT
GGAAGAGAGCAAGGCTGGGTTTTGAAGGAGAAATGTAAGAAGGAAGTATA
ATCTATTATAATCTCAAGAAATAAAAGAAATACTTTAAAAGATAGAAAGA
AATGAAAATGGAAGGAAAGAACAAAGGAAGGGAGGGAAAAAGGGGTACAG
GAGGAAGGGGGAGGGGAGGCAGTGACCACACCACCAGGAATCAGGAAGTT
GGCATTTGAGAAAAGCTGTTCCATAGCCTCATCCTGCTCCTACCAGCAAG
CTAAATGCCTGGTGTGTACAAGCAACTGGCCCTCAATATTACCA
AATACAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAGTCACCTGACTTCAGGAAAAGCAAT
AGCTGCCAATGAGGCTGGACAGAGCTTAGCTAGCTCTCTGTCTCTCCCTC
TCTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTCCCTCTCTG
TCTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCACTCTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTTGTGTGTCCCAAATGACTGAAGCTCAGTAACTCA
AATATGATTCTTTAAAAAGGTAATAAATTTCAATGAGACTATTAGGATAA
GTCCTACATTATTCATCTGCTTTTTTGTTTTGTTTTGCTTTGTTTTTGGT
ACGAAAACCACCGCACTTGTAAGTGGCCAGCATTATTTGGCATACATATC
CTGATCACATTCCATCACTGAGGGACTAATAGTACTGTGCTGATTTGAAT
GACAATGACCTCTGTTAGCATATGTGTGAATAACTGGTTTCTAGTTGGTG
GAACTGTTTCTGACGTATGCTCTTAATGAAAGAAGTATGCCTCTGCCCGC
ACGATTTGAGCTTTCATATGCCTGGTAACACCCCCAGTGTGCTCTTTCCG
TACTTCCGTTCGTGGATCTTTGCAATTCACGCTTGTTATCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_o14.b1 MSMg01no092_o14.b1 CHROMAT_FILE:
MSMg01no092_o14.b1 PHD_FILE: MSMg01no092_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:56 2005
         (364 letters)



>mm_chr14_102653543_102654306
          Length = 764

 Score =  665 bits (344), Expect = 0.0
 Identities = 356/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacatcttgacctgcaggtagcagaaggggactgtctacatcctgggtatagct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatcttgatctgcaggtagcagaaggggactgtctacatcctgggtatagct 264

                                                                       
Query: 65  tgagcattggcaccctcaaagccttgtccccacagtgacatacttcctccaacaaggcca 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagcattggcaacctcaaagccttgtccccacagtgacatacttcctccaacaaggcca 324

                                                                       
Query: 125 catgtactccaacaaggcctgacttcctaatagtaacacttcccacggaccaaccattca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgtactccaacaaggcctgacttcctaatagtaacacttcccacggaccaaccattca 384

                                                                       
Query: 185 aacacatgagtgtatgggggggggcaaacttattcagaccaccatagtcattcaatacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacacatgagtgtatgggggggggcaaacttattcagaccaccatagtcattcaatacct 444

                                                                       
Query: 245 ttaaaaacacatacaggtaatatataatacagactgaactggttttatttatgaaattgt 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 ttaaaaacacatacaggtaatatataatacagactgaactggttgtatttatgaaattgt 504

                                                                       
Query: 305 ataaatgtgtcatatatataaacaactattcatgaataaaagaggtcacgagtgtggaag 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaatgtatcatatatataaacaactattcatgaataaaagaggtcacgagtgtggaag 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)