BAC Information

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BAC

Clone NameMSMg01-093A10
Chromosome14 (Build37)
Map Location 69,656,835 - 69,657,214
singlet/doubletsinglet
Overlap geneStc1
Upstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
Downstream geneEG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093A10.T7 (MSMg01no093_a10.b1)MSMg01-093A10.TJ (MSMg01no093_a10.g1)
ACCAG310573AG310574
length1,3241,212
length of high quality
(start - end)
356 (121 - 476)380 (85 - 464)
definitionCHROMAT_FILE: MSMg01no093_a10.b1 PHD_FILE: MSMg01no093_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:06 2005CHROMAT_FILE: MSMg01no093_a10.g1 PHD_FILE: MSMg01no093_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTANNNNGGTCATTGGGCGCTAACGACTCCTAAGGGAGAGGATCCGC
GGAATTCTTCTCTCCTTTCCCACCCTTTTGCTAGGGATTGAACTCAGACT
GTGAGTTTTGTACCGTTAAGTGCCTTTGCCCGATGAGCCGTCTTGTTGGC
CAAGTATTAACAAATCTGCACACATGAAGTTTCTGTGTTTGTGCTATAAA
CTTATCTGTGTTTTTGACAAATAGTGTTATTTATCATTGTAGTACCAAGT
AGAATAACTTTGCCACCTTTATAAAAACCCTCCTATTTTTCCTATTTAAA
CTTTCCTCTTTAACCTGAACCTTCTAAAGTAGTCACACACTGATTTTTAA
ACCATCTTTATGTTTTATCTTTCATGAAATGTCATACGGTTAGTATTTAA
AGTTTTTTTTTTTTAATTTAACTTTATTAGTTTATGTGTGCCTCGGGTGT
ATATTATTGCAGTACTTACAGCTGTCAGAAGAGGGCACCATATGAGTTAC
AGATGGTTGTGAACCCCTTGTCATGTGTGCTGAGGAATCATCTCTGGCCC
TTTGTAATACCAGCACACGCTTCTTAATTGCAGCCTTCTCTTTCCTTCCC
TATACTGTCGTGTATTTGTAACTGTGCATTCAAGAGTCTTCCATTATCTG
TAATCTATCTCTATTATATGTACAATTGTTTATTCAGCTTCTTTTCTTCG
TTGTTTGTAATCACTTTTTCTTTCTTATTATTTATTTTTTTATTATATTT
TGTTTCTTTTTTCTTTTTTTTTTCTTTTCTTTTTCTTTTTTTCTTTTTAA
TTTATTCTTCTTCACTTTTATTTTTTTTCATTTTTGTTTTTTTTATCCTT
TTCTATTTTCTTTTCTATTTTTATTTCCTTTATTTTTTTTTCTTTCTTTC
TTTANATCTCTTTATCTTTTTCTTTTCTTTTATCTTCTCTCTTTCTTTTT
CAATTTTCTTATCATCTTTTTTCATATCTTCTTGTATCTCTTTTTTTTTT
TTTTATTTTCTTCTTGTTATTTTCTTATCTTTTTTTTATCTTTTTTATTA
TTATTTTTTTTGTCATTTTTTCTATTTTATATANTTTTTTTTTATTTTTT
ATTTTGTTTCTTTTTTTTCTTCTTTCTATTATATTGATTTATTCTTTATA
TATTACTTCTTATTCTTTTTATCATCTTTTTCCATTTTCTATTTTGTCTT
TCTCTCTCTTCTTTTTCTATTATTTTTTTATACCTTTTACTCTNCTCATT
TAATATTTTATATCTCTTCTTTTGCTCCTGTCCTTATCTATTATATANAT
TCTANTCTAGCTTATTACTTTTAT
NCCTATTAATNNNNAATTGCATGGTAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCAGATCCCTA
TCTACTCTTCGCAAACACAAACCATTCATGTAACTACCCAGCCATTGTAA
TCTGAAAATGTAGATCCCTTTAGAATGGTCACCTGGTAGAGTTAGCCAAT
ACAAAACAACTTTATTTAAATGCATGTCTTAAATGCTCATAAATATGTTA
AATGGAATTCATGTTATGAATCTGTGCTGGCCATGGACGAATATGAATGT
CATGTTTGAATTCTTGATCTCTAACGAGTCTTATGGTCTCTATCCTCCAA
TGTCTAATTTCCTTTCTGACATATTTACCAAATTGCTCAAACCTGGTTCT
CCAACCAGACTTTGAGCTAGCATCTTCTTGCATCTAATGAAAAACAAAAA
AGCTAACATCTTTATGTACTGTACCTGCTCAGAGCTTTAAAAGTATCTTT
AAAAATTGTCTTAAAAAACGGAGAATCTTAAGGTCTAACTGTGGAATATA
AATAGCTGAAAACTATTGTACTGTACATAAATTCCAGAGGACTCTGCCTC
AACAGAGCAGTCTATAATAACTTTATTGCATATAGATTTAGTTTTGCACC
TTAGCTTTTATTTTCCTTTTCCTGGGAATGGCATACCTATCTCACTTCCA
GACCTCCACATCTCTGCTCCTTGTGGTCTTTTTTATCACTACGGTGTTAG
AAGTATTTCTTATCTTCACTTCCCAATTTAATACGTTTTCTATACTTGAT
AGGTAAATCCTCAACAGGTTATCTTGATCACTCCCAAGTAATTAGCTTTA
TTTCCTATTCTTACCTCTACTTGTACGGTTACTTTTTGATCTTATATTTT
ATCCTGTATTCTTCCTTTTTCTTTCCTATCTTTTATATATCCATTATTTT
TTATATCCTTTCCCTTTTGCATATTTTATCTTTTCTCTTTAATTATTTTT
TTATATTCCCCTTTATATTGTTAAATTTTTGTTTTTCTTTTCTTTCTTTA
CTTCTCTTTTATTTTCTTTTAAATTCATTTTTTTCCTTAATTTCTTCTTT
CTCCATCTTATTTTATATTCTTCTATTAATTTCTTTTTACTTTTTTTCTT
NTTCTATTTTNATTCTTCTCTTTAATTCTTAAGTCATTTTACTCTCTATT
TCCTCTTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_a10.g1 MSMg01no093_a10.g1 CHROMAT_FILE:
MSMg01no093_a10.g1 PHD_FILE: MSMg01no093_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:06 2005
         (380 letters)



>mm_chr14_69656635_69657414
          Length = 780

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcccagatccctatctactcttcgcaaacacaaaccattcatgtaactacccagcca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttttcccagatccctatctactctccgcaaacacaaaccattcatgtaactacccagtca 260

                                                                       
Query: 61  ttgtaatctgaaaatgtagatccctttagaatggtcacctggtagagttagccaatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaatctgaaaatgtagatccctttagaatggtcacctggtagagttagccaatacaa 320

                                                                       
Query: 121 aacaactttatttaaatgcatgtcttaaatgctcataaatatgttaaatggaattcatgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aacaactttatttaaatgcatgtcttaaatgctcataaatatgttaaatggaattcgtgt 380

                                                                       
Query: 181 tatgaatctgtgctggccatggacgaatatgaatgtcatgtttgaattcttgatctctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaatctgtgctggccatggacgaatatgaatgtcatgtttgaattcttgatctctaa 440

                                                                       
Query: 241 cgagtcttatggtctctatcctccaatgtctaatttcctttctgacatatttaccaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgagtcttatggtctctatcctccaatgtctaatttcctttctgacatatttaccaaatt 500

                                                                       
Query: 301 gctcaaacctggttctccaaccagactttgagctagcatcttcttgcatctaatgaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcaaacctggttctccaaccagactttgagctagcatcttcttgcatctaatgaaaaa 560

                               
Query: 361 caaaaaagctaacatcttta 380
           ||||||||||||||||||||
Sbjct: 561 caaaaaagctaacatcttta 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)