BAC Information

Click to search

BAC

Clone NameMSMg01-093G08
Chromosome14 (Build37)
Map Location 33,692,568 - 33,692,728
singlet/doubletsinglet
Overlap geneE130203B14Rik
Upstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik
Downstream geneEG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093G08.T7 (MSMg01no093_g08.b1)MSMg01-093G08.TJ (MSMg01no093_g08.g1)
ACCAG310852AG310853
length1,5581,172
length of high quality
(start - end)
---161 (63 - 223)
definitionCHROMAT_FILE: MSMg01no093_g08.b1 PHD_FILE: MSMg01no093_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:57 2005CHROMAT_FILE: MSMg01no093_g08.g1 PHD_FILE: MSMg01no093_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTGAATATTTTTTTTGCGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGCAATTCTTAATGGAAGGTACCACCCTTATAAAAGGAC
GATAAANATAGTTTGAAGTCTGGTGTAGGTATTCCCCCCTTTAAGAGCTT
CGCCCGGGGGCTCACTTCTCTATGGAGTCAGGCTGTTGCATCTGCCTCTA
TCCAAAATGCTTGTATAGTCGTCCTACATTTAAATGATGCCTCCTAATAT
GGACGCAGCTGCGTATGCCTGTGTTATCTGACTTGCACTGTTCTTTCTAT
GGTCTGTCTCTGGTTCTTATAGATGAACCCTGCGCCTGGTCTCGAGTACT
TCCCCTCTTGCATTCCACCTGTTCACTGTTTTGCAGCAAGTTTTGCTATT
TCTTTATTTCATTGTACCCCATTCTGCTATCATGTTATCCCCGCCGCCCT
TCTTTTTTTTCTTCTCGCACGAATTCTTCCTCTCTTTTTATCGATGTAAT
TCTCTCCCCTCTATTTTATTCTCCCCCCCCTCCATTCTTATCTTATTTCT
CTCCATTCTAATATACAATCCCCTTTCTCTTTCCTTTCTTTCTTTTGTTC
CTCTCCACATTATCTTTTCTTATTATTTCTCTTCTTCATCTTCATCTCTT
TCATTTCTCATCCTCATCTTTTTCTACTTTTTTTCGTTCTTTTTCTCTTC
CTTCTTATTTAAATACCTTCTTTTTTCTCTCCTACCTCATTATCAACACT
CTACTACTCTCTTCTTTTTCTCTTTCACTTATCTCTCTTTTCTCAACATT
TATTTACTCTTTTCTTCATATCTTATTCTATTCTCCTCTCTTTTTCCTTT
CCTCCCTCTTTTCTATCTCCTCTTCCCTCTCTCACTTACTTTCCTCCTCT
TTTTCTTCCATCTACTCCTTCCTTTCCTATCTCATCTATACCCATTTCTC
CTTTATTCCTTTCTCCTCTACTCTTCCCACCTATCTTATCATTCTGCTCT
CATCTTATCTCCTCCCGTCCTTCTCACCCTTCCTTTCCTCTTCTATTTCT
TTCCTTCATCCCCCTCTCTTCTTTCCATCTCTTTTTTTTCATCCACATTT
TCTCTCTCCTAAACTCCCTTAACTTTTCCTCTTCCTCTCTTTACTTTCTC
TCTATCCTCCTTCTTCTTCTTTCTTATCTTCCTTTCACCTCCTTCATATC
ATAATACCTACACTATTCCTTATATCTTTCACTCTTCCTCCTTTCTTCTC
TCATTTATTATCAGATCTTATTTATATCTCTCTTTCATTCTTTCTATTAT
CTTCCCTTCGCGTCCCTTCTCTCCCATATCCTATACTTACCTATAATTTC
CTTGCTGTACTTTTCTCTCTTCTCTTCTCCTCATCTATCTTATACTATTT
ATTAATACTCATCCTTCATTCTTTTATTCCCTATATTATACAATTACAAT
ACCTTTATACTTATCTATTTCATGCATTCTTTCTCTCATCTTCTATAACG
TGACTTTACTATTCCTCTCTCTCTCTCCATCTCAGTTCTTCTTCATTATA
TTCTTTTA
CTTAAATATTTGAGAAGCTTAAAAGACAATGTAGGTCACCCCTAAGGACC
AAGAACATGGTAATGGTTGACTCTTGAGCTGGGGAAACTCACCTCAGCTT
GTCTGTCTCCCATTCCTAAAAAGGACTCCCTGCCCCTTTATAACTGGAGT
TAACTCTCCACTTCTTAGATGCTTACTCCCCCTAAGACCACTTGCAATTG
GTGAAGAATTACAGGCAGCTAGGGGAAAAAGTATAGGAAGAGGTGGTCAG
AACCTCTTATAATAACCTTCGAGCATGACCCTCTCCATCCCTTCTGCTGA
GAAAACACATCAGGCCATATATTAAGGATTTTCTACAGCAGAAACAGTTG
CTCTCGTTAATACAGCAATGGCTACCGTCTGTGTTATGCCCACCCCGTTC
CATATTCTCCGAGACTCTTGATCTCTGGATGTATCTTGCCCCACATATCC
CTTTCCTCTCGTACTACCCATTATCTCTGTCTCCTATTCCCTGCTCCTCA
TGTTGTCTTATAATGTCACACTATCCTCTGAGTGTGCGCTCTTTCTGACT
GCCCCATGTATTACCTCGTTTTACGTCTTGTTCTTTCTTTCGCTATTATT
TTAATTGTCTTATCTGATTTCCTATTTTATCCTCTCCACCCTTATTGCTC
CTGCTATTTTTTTCTGTTCTATTTTTTTTTTTTTTTCCTTATTTTCCTTC
TCTTTATTCTTCTTCTTTCCTTTTCCTTCTCTCTCTTTTTTTCTTATCTT
CCTTTCTTCCTTTTTTTTTTTTTCTCCTACTTTTTTCTTTTTTTTTTTTT
TTTCTCACTTTATTAACTTAATTTCTTCTTTTTTTTTTCATTTTTTCTTT
TCATCTTTTATTTTTCTTACTTTTCTATCTCTTTTCTCTTTCCTCTCTTC
TCCTATTTCACTATTCTTTTCCTTCCTTATTATCTCTTCTTTTTCACTTT
TATTTCTCTTTCTCTTCTTCTCTCCTTCCTCTCATCTCTTTCTTACTCCT
CTATATCCCCTTTCCTAACTTTTCTCTCTTCTCTTTTTNTTCTTTTTTCT
CTCTCTTTTTATATCATCTATTCTTTTCTTTCTTCTCCTTTTATTATATC
TTCCATTCTATATATATTATCTACTTTCCATCTTTTTCCTTCTATCTTAA
TAATTCTTACTCCTAATCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_g08.g1 MSMg01no093_g08.g1 CHROMAT_FILE:
MSMg01no093_g08.g1 PHD_FILE: MSMg01no093_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:58 2005
         (161 letters)



>mm_chr14_33692368_33692928
          Length = 561

 Score =  311 bits (161), Expect = 1e-89
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggttgactcttgagctggggaaactcacctcagcttgtctgtctcccattcctaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggttgactcttgagctggggaaactcacctcagcttgtctgtctcccattcctaaaaa 302

                                                                       
Query: 61  ggactccctgcccctttataactggagttaactctccacttcttagatgcttactccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggactccctgcccctttataactggagttaactctccacttcttagatgcttactccccc 242

                                                    
Query: 121 taagaccacttgcaattggtgaagaattacaggcagctagg 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagaccacttgcaattggtgaagaattacaggcagctagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)