BAC Information

Click to search

BAC

Clone NameMSMg01-094E08
Chromosome14 (Build37)
Map Location 75,381,717 - 75,382,264
singlet/doubletsinglet
Overlap geneLOC100043169
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519
Downstream gene5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094E08.T7 (MSMg01no094_e08.b1)MSMg01-094E08.TJ (MSMg01no094_e08.g1)
ACCAG311487AG311488
length752673
length of high quality
(start - end)
315 (107 - 421)548 (56 - 603)
definitionCHROMAT_FILE: MSMg01no094_e08.b1 PHD_FILE: MSMg01no094_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:51 2005CHROMAT_FILE: MSMg01no094_e08.g1 PHD_FILE: MSMg01no094_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCTTNNNNNNCCCCCCNCCCCC
CGTAAGCGCCTGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTGCTCTGGAGATGGTCTTATATGGAAATATGAGT
TCATCAAAATCTAGGACTTTTCAAAGACTGACCCATTCCATCCTTTCAGG
GAAGTCCTTAAAACAGAAAAAAAAAAATCTCAAAATAGTTTCAGGAAGTC
CCTGAAACTGACCAGATCTACCCACCACCACCCTGCCTCCAAGAATAAAC
AGTAAAGCCTGCTGAGAGTCATCATCAGGGGAACAAAGCTGAAAAGGAAA
CTGGGAGCTAATCCAGCTGTCTGGAAGAAGCAGAGGCTGGCTGAGCTGCC
TGAAGAGGTTTAGACCTACTGATTCACTAGCAAGGCATACGCTCCAATCT
GTTGAGCTACCTGTAGGCTGTGCAGCTTGCTTCAAATTCCTAGCTTTGCG
AGCTGTCACCCATGCTGCGTTTGGATTTGGTGACTCAGCTGTCTTTGAGT
CCTCTCTGATCCTATCCTCATTGAACTGTATGGATCGGGGATGTCAAATT
GACACAGGCTGGACTCATCCCGCAGAAAGAATCTTTCAGATGGTAGAGAA
GCCTCACCTTAAAGTCCGCTGTAAAGTATTTCTCTTAATTATGGGTTTAA
CGGTAGCAAAGGAATCTTGCGTAATGGTTATATCTTCCTGGAAAGGAAAT
TN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTAGATCACATTCATGAGCACCAAGATTTATTCTTTAAAAAAAAA
TGACCTCATCTTAACAATTAATCACTAAGCTTAATTTCTATTTCATCATA
GATGGGCAAACCTGTGTGATCACTGTGGCCTGCACTTTTTAGCTCTGAAT
CCTTACTTCCTAGTCACTAGACAATGACACCTCCAGCCATAGATTCAGCC
CTGCCCTAGCTTTGCGCATCTACACTGGCTGGCTCTATGCTGATGGACTC
AATGTGTCTTACACCTATGTTCTTGACTAAAGTACGAAGTCACCTTTATT
TCTCGCCCAGCTGCAGGCTGCCTCCTTAATCGTGAGAACTAGCTTTGTGT
ATTAACCCAGGGATGTGTTCTTACACAACACCCTGATTCTAGCAAGCGAG
TCCTACTTCATTTTCTATTTGCAGAGAGGAATGGAAAGAGAGAAAGAGGG
AGAGATGGGTAGAGCAACGGGGGATGATAGAACAGGAGAGAACAGAATAG
GGGAAGGGGAGGGGACGAGATGGCAGGAAGAGAAGAGCCCACTAATCTTC
ATCAGTGCGCTTGCATATGGTTTGCATCTGCCTGCTCTAAGCTGGAACCC
TGGTTCCCAGTGTGGTCCCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_e08.g1 MSMg01no094_e08.g1 CHROMAT_FILE:
MSMg01no094_e08.g1 PHD_FILE: MSMg01no094_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:51 2005
         (548 letters)



>mm_chr14_75381517_75382464
          Length = 948

 Score = 1021 bits (528), Expect = 0.0
 Identities = 543/548 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagatcacattcatgagcaccaagatttattctttaaaaaaaaatgacctcatcttaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttagatcacattcatgagcaccaagatttattctttaaaaaaaaatgaactcatcttaac 260

                                                                       
Query: 61  aattaatcactaagcttaatttctatttcatcatagatgggcaaacctgtgtgatcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaatcactaagcttaatttctatttcatcatagatgggcaaacctgtgtgatcactg 320

                                                                       
Query: 121 tggcctgcactttttagctctgaatccttacttcctagtcactagacaatgacacctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcctgcactttttagctctgaatccttacttcctagtcactagacaatgacacctcca 380

                                                                       
Query: 181 gccatagattcagccctgccctagctttgcgcatctacactggctggctctatgctgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gccatagattcagccctgccctagctttgcgcatctacactggctggctctatactgatg 440

                                                                       
Query: 241 gactcaatgtgtcttacacctatgttcttgactaaagtacgaagtcacctttatttctcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactcaatgtgtcttacacctatgttcttgactaaagtacgaagtcacctttatttctcg 500

                                                                       
Query: 301 cccagctgcaggctgcctccttaatcgtgagaactagctttgtgtattaacccagggatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagctgcaggctgcctccttaatcgtgagaactagctttgtgtattaacccagggatg 560

                                                                       
Query: 361 tgttcttacacaacaccctgattctagcaagcgagtcctacttcattttctatttgcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcttacacaacaccctgattctagcaagcgagtcctacttcattttctatttgcaga 620

                                                                       
Query: 421 gaggaatggaaagagagaaagagggagagatgggtagagcaacgggggatgatagaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggaatggaaagagagaaagagggagagatgggtagagcaacgggggatgatagaacag 680

                                                                       
Query: 481 gagagaacagaataggggaaggggaggggacgagatggcaggaagagaagagcccactaa 540
           |||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 681 gagagaacagaagaggggaaggggagggtatgagatggcaggaagagaagagcccactaa 740

                   
Query: 541 tcttcatc 548
           ||||||||
Sbjct: 741 tcttcatc 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)