BAC Information

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BAC

Clone NameMSMg01-094F10
Chromosome14 (Build37)
Map Location 25,361,271 - 25,361,729
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
Downstream geneLOC669315, LOC100039411, Zmiz1, I920194n01, LOC100039007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094F10.T7 (MSMg01no094_f10.b1)MSMg01-094F10.TJ (MSMg01no094_f10.g1)
ACCAG311537AG311538
length669671
length of high quality
(start - end)
531 (57 - 587)283 (114 - 396)
definitionCHROMAT_FILE: MSMg01no094_f10.b1 PHD_FILE: MSMg01no094_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:56 2005CHROMAT_FILE: MSMg01no094_f10.g1 PHD_FILE: MSMg01no094_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGAT
ACACGAACTTCATGGAAAAAGGGTTGATCTTGGCTCATAGCTCACCATGG
CAGGAAAGCTCTGGCACCAGGAACATGAAGCCAGCATATCCAATCACCCA
ATCCAGGAGCAGTGAGAAAACAAAAGAGAAATCAGATCATAAAAACCTCA
AGGCCTGACTCCCCCATGACACAATTCTGCCAGTGGTTCTACAACCTTCC
CAAACAGCACCACCTGCTGGAGACCAATTGTTCAAACACCAGCGCCTAAG
GAGGACATTTCACATTCAAACAATATCAATTGATGGGGCTTTGGAAATGA
CTAAGAGGATGAAGGCTCAGCCCACGTCAGTAGAGTAACCCACTTGGTGG
TTTCATAATTTGACTCACTACAGGGAGATGGTAAAGACTTAGGAGACAGA
GCCTAAGAAGAGGAAATAGGCCCTTTCCTGTTTATTTCTTTCTACTTCTC
TGAGCACCACAAAGTAAGCACCTTTGCACTACCATGCCTTTCCACCATGA
GGTGCTGCCTCACCATGGCCCAGTTTAAAAACAAACTAAACAGAAAACAA
AAACAACATAAACAAACTAAAAACCACCACCACAACAAAAACCTACTGCC
AACCAACCATGAACTGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCT
CACCATCCTTGATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGA
AAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGC
CCCTCAACAGAGGAATGGATACTGAAGATGTGGTATATCTACCCAATGGA
GTACTACTCAGTTATTAAAAAGAATGAACTTATGAAATTCCTGGCCATAT
GGATGGACCTGTAGGGCATCATCCTGAGTGAGGCAACCCATTCACATAGG
AACTCACACTTTATGTACTCACTGATAAGCGGATACTATCCTCCACATCT
CGATACCCATGATTTCCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_f10.b1 MSMg01no094_f10.b1 CHROMAT_FILE:
MSMg01no094_f10.b1 PHD_FILE: MSMg01no094_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:56 2005
         (531 letters)



>mm_chr14_25360799_25361729
          Length = 931

 Score =  857 bits (443), Expect = 0.0
 Identities = 455/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 72  aagccagcatatccaatcacccaatccaggagcagtgagaaaacaaaagagaaatcagat 131
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 931 aagccagcatatccaatcacccaatccaggagcagagagaaaacaaaagagaaatcagat 872

                                                                       
Query: 132 cataaaaacctcaaggcctgactcccccatgacacaattctgccagtggttctacaacct 191
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 871 cataaaaacctcaaggcctgactcccccatgatacaattcttccagtggttctacaacct 812

                                                                       
Query: 192 tcccaaacagcaccacctgctggagaccaattgttcaaacaccagcgcctaaggaggaca 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tcccaaacagcaccacctgctggagaccaattgttcaaacaccagcgcctaaggaggaca 752

                                                                       
Query: 252 tttcacattcaaacaatatcaattgatggggctttggaaatgactaagaggatgaaggct 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tttcacattcaaacaatatcaattgatggggctttggaaatgactaagaggatgaaggct 692

                                                                       
Query: 312 cagcccacgtcagtagagtaacccacttggtggtttcataatttgactcactacagggag 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cagcccacgtcagtagagtaacccacttggtggtttcataatttgactcactacagggag 632

                                                                       
Query: 372 atggtaaagacttaggagacagagcctaagaagaggaaataggccctttcctgtttattt 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atggtaaagacttaggagacagagcctaagaagaggaaataggccctttcctgtttattt 572

                                                                       
Query: 432 ctttctacttctctgagcaccacaaagtaagcacctttgcactaccatgcctttccacca 491
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctttcaacttctctgagcaccacaaagtaagcacctttgcactaccatgcctttccacca 512

                                                  
Query: 492 tgaggtgctgcctcaccatggcccagtttaaaaacaaac 530
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgaggtgctgcctcaccatggcccagtttaaaaacaaac 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)