BAC Information

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BAC

Clone NameMSMg01-094N07
Chromosome14 (Build37)
Map Location 99,793,791 - 99,794,203
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789
Downstream geneLOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N07.T7 (MSMg01no094_n07.b1)MSMg01-094N07.TJ (MSMg01no094_n07.g1)
ACCAG311894AG311895
length650709
length of high quality
(start - end)
201 (5 - 205)489 (72 - 560)
definitionCHROMAT_FILE: MSMg01no094_n07.b1 PHD_FILE: MSMg01no094_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:38 2005CHROMAT_FILE: MSMg01no094_n07.g1 PHD_FILE: MSMg01no094_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTTGGTTTAGTTCTATATCCCATTTTTTGATTGGG
TTGGTTTTTTTGGTGATTAGCTCCTTGAGTTCTTTATATATTTTGGATAT
TAGTCCTCTCTCAGATGTGGGGTAAGTGAAGATTTTTTTCCCAATCTGTA
GGTTGCTGATTTGTCTTATTGACTATGTCCTTTGCCTTACAGAAGCTTTC
CAGTTTCAGGAGGTCCCATTTATCCATTCTTGATCTGAGAGTATGAGCCT
CATGGAGTTCTGTCTAGGAAATTTCCCCCCTGTGCCTATGAGTTCCAGGC
GTTTTCCCAATTTCTCTTTTTTTTTTCCCACCTCCTCCCTCTTTTTCCCT
CTTTCTCTTCCATCACATTCTTTGCTCCTAGATTTATGTATATGTCCTTG
ATCTTCTTTGCCTTTCCCCTTTTTTCATTTTTCCTTCTTCCTCGTCTATT
CTTCTTCTTTCTTCCCCTTCCCTCTCTATTTTACCCTCCTATTTTTCCTG
ATATCATCTCTCTCCCTTCCACTTCATTTCATTTACCCGCCTTAATATAC
TATTCCTCTTTACTGTCCTCCTCTCGCATCATCCTAATCTCTTCTTTTTT
TTGTATCCTCTTTTCATCTCTTCTCCTCATTTTAACCCTTCCATTTTATT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTCTTCAGGTTTAAGATTGGAAGAGA
AAAGGTAAAAACATGTGAATGAAGTCTTATTTCCAATACCAGCAAGACTG
TGGCTCCTTTTGAATGGAGTAGGTGAAAGCCTTGTTAGTTGGATCAAGAG
CAAAGATGCTTGCTGCTAAGCCAGAGGACCTGAGTTCAATCCCCATGACC
CACATGATGATGGAAAAAGAGAATCCTCTCTGATTTCCACGTGTGTGCAG
TGGCAAGTACACACACACAGACACACACACATACACACACACACACTATG
TAATTAAAAGAAAAAAAGGCACATTTTTTTAAATATAAAGAGTAGGTTAT
GAGGATGAATAATGGGTGTTTCTGTAAATGGGAAGCAGTCAGCTCTGACA
TTAACAAAAGTGATGAGTCACCTTTGCGCAGCATCAGAAAGAAGCCAGAG
GAGCATTCAGACATTTTCTACCTAGGTAAGAACAGCAGCTCTTTGGCTTG
ACTGTGTCCACGGAGAACATCAAAGTATTCTGCACCCTTAACTTCTCACT
GATAATGCAAATTATATCCAAGCAGGTACCCCTAGTTGCCTGTCATTATG
ACTTACCCCTTATGGCAGTCAGCATATAAAAGGTGACCTCTGACACTAGC
TATCCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n07.g1 MSMg01no094_n07.g1 CHROMAT_FILE:
MSMg01no094_n07.g1 PHD_FILE: MSMg01no094_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:38 2005
         (489 letters)



>mm_chr14_99793315_99794203
          Length = 889

 Score =  791 bits (409), Expect = 0.0
 Identities = 412/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 77  ctgtggctccttttgaatggagtaggtgaaagccttgttagttggatcaagagcaaagat 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ctgtggctccttttgaatggagtaggtgaaagccttgttagttggatcaagagcaaagat 830

                                                                       
Query: 137 gcttgctgctaagccagaggacctgagttcaatccccatgacccacatgatgatggaaaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gcttgctgctaagccagaggacctgagttcaatccccatgacccacatgatgatggaaaa 770

                                                                       
Query: 197 agagaatcctctctgatttccacgtgtgtgcagtggcaagtacacacacacagacacaca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 agagaatcctctctgatttccacgtgtgtgcagtggcaagtacacacacacagacacaca 710

                                                                       
Query: 257 cacatacacacacacacactatgtaattaaaagaaaaaaaggcacatttttttaaatata 316
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cacatacacacacacacacaatgtaattaaaagaaaaaaaggcacatttttttaaatata 650

                                                                       
Query: 317 aagagtaggttatgaggatgaataatgggtgtttctgtaaatgggaagcagtcagctctg 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aagagtaggttatgaggatgaataatgggtgtttctgtaaatgggaagcagtcagctctg 590

                                                                       
Query: 377 acattaacaaaagtgatgagtcacctttgcgcagcatcagaaagaagccagaggagcatt 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acattaacaaaagtgatgagtcacctttgcgcagcatcagaaagaagccagaggagcatt 530

                                                                
Query: 437 cagacattttctacctaggtaagaacagcagctctttggcttgactgtgtcca 489
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cagacattttctacctaggtaagaacagcagctctttggcttgactgtgtcca 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)