BAC Information

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BAC

Clone NameMSMg01-095D02
Chromosome14 (Build37)
Map Location 63,007,305 - 63,007,824
singlet/doubletsinglet
Overlap genenone
Upstream geneKpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7, Rnaseh2b
Downstream geneGucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D02.T7 (MSMg01no095_d02.b1)MSMg01-095D02.TJ (MSMg01no095_d02.g1)
ACCAG312165AG312166
length696689
length of high quality
(start - end)
328 (33 - 360)520 (55 - 574)
definitionCHROMAT_FILE: MSMg01no095_d02.b1 PHD_FILE: MSMg01no095_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005CHROMAT_FILE: MSMg01no095_d02.g1 PHD_FILE: MSMg01no095_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCCTATATCCAGAGGATCCGCGGAATTCTTCTCG
GTAGCATTTCCTCAGGGTCAGGACATAGGAGCTATGTTCTGGGGGTGGAG
AAAGACTGCATCTCAAGCTGACAGCTACGTTTGATAATGTCCAAGATTCT
CCCACATGGTGCTGATTTTGAAAGCATGGGGAACAGCTGAGCCTTTTCCC
TGTGAGAAGCCAGGAACCGTCACTGGTGAAAGTGAAGCCTTGGCTGTAGG
GTGACTCAGAATACTGGAGGTACAGGGATGACTACCACGGCCATGGGATG
ATCACCAAGGAAAGCAGTAGATGTGGAATGGAGCCAGCATGAGCCTATGA
GGTAAGCTGTGCGTGTTGTGGATAACAGAGGCCAAAGGGGAGCACTGCCT
AACCCCTTCGAACCCCAGAAGACCATGAGTCCCAGCCAATCAGACATTTG
AGCTTTTTATGACATTGGATTTTGGTTTGCTTTGCTTGTAACTGTGCCCC
TGTTCTTTTGTGAAAAGGTAGATTGGGAAATCCTGAAGTCAGAGAAGTAG
AGAGAGGTACAGGGAGAAAGAGTATCAATGGGATGATGGAAACTTTGAAT
GTGCCTTGCCTGGGGTCTTCCCACCTCATAAATCAAGAACAGCCTAGGGC
ATCACGTGTCTCAGCCTGTATCCTTTCTGCTCTCAAGGTGGTGATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCCCTCAGGGGTTCAACTTGATGTGAGGTGAGGAGGAAATGAC
AGCCGTTCCATGTCTGCATTCAGTGGGGTCTAATGATGGCACTCTCTTAG
ATCTTAGTGGCCTATCTAAGCCATCAGCATCTACCCAGGAACTTGGGTTC
ACATATATAGCAGGACCATTGTGGTACCCAGCTGAAGTCCTTTGAGCATT
ACACAGGTATGGTTTTTAGCCACACTGCGCAGACAGGAAACTGAGGTACA
GACCTAGGACTTGGCCTTCAGACCCACCCTACCCCAACTCTGATCTTAGC
TCTCAGCCATTGGCTAGAGCCGTCTCTGTGTTGGAAGCAGAGACTGTACT
CCTGACACAGCAGCTCCAGTCAGATATGTGCTGTCATGAACCGAACAGGA
GAGACCTAAAGAAAAGTTACAGTGTGATTTTTCACTGGAGATGTCCAGCT
ATTAAAAGAGACTGAAACATGAAGTCCCAGCTTTAAGTGTCCCAGCATAC
ATTTATAGTTTACCACAGGCTACGGTGTCCCCAGGTATAGTCAGGGCTCC
TGTTGGCTGTGGAGCAAATACTTAGAGGTTTTTTGACCTTTTGACTCCAG
CAGACCCTGGAGTCTCCCCCAGATCCCTGAGCTGCGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d02.g1 MSMg01no095_d02.g1 CHROMAT_FILE:
MSMg01no095_d02.g1 PHD_FILE: MSMg01no095_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:08 2005
         (520 letters)



>mm_chr14_63007105_63008024
          Length = 920

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcccctcaggggttcaacttgatgtgaggtgaggaggaaatgacagccgttccatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 720 tttcccctcaggggttcaacttgatgtgaggtgaggaggaaatgacagcagttccatgtc 661

                                                                       
Query: 61  tgcattcagtggggtctaatgatggcactctcttagatcttagtggcctatctaagccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgcattcagtggggtctaatgatggcactctcttagatcttagtggcctatctaagccat 601

                                                                       
Query: 121 cagcatctacccaggaacttgggttcacatatatagcaggaccattgtggtacccagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cagcatctacccaggaacttgggttcacatatatagcaggaccattgtggtacccagctg 541

                                                                       
Query: 181 aagtcctttgagcattacacaggtatggtttttagccacactgcgcagacaggaaactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagtcctttgagcattacacaggtatggtttttagccacactgcgcagacaggaaactga 481

                                                                       
Query: 241 ggtacagacctaggacttggccttcagacccaccctaccccaactctgatcttagctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggtacagacctaggacttggccttcagacccaccctaccccaactctgatcttagctctc 421

                                                                       
Query: 301 agccattggctagagccgtctctgtgttggaagcagagactgtactcctgacacagcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agccattggctagagccgtctctgtgttggaagcagagactgtactcctgacacagcagc 361

                                                                       
Query: 361 tccagtcagatatgtgctgtcatgaaccgaacaggagagacctaaagaaaagttacagtg 420
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 360 tccagtcagatatgtgctgtcaagaacagaacaggagagacctaaagaaaagttacagtg 301

                                                                       
Query: 421 tgatttttcactggagatgtccagctattaaaagagactgaaacatgaagtcccagcttt 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgatttttcactggagacgtccagctattaaaagagactgaaacatgaagtcccagcttt 241

                                                   
Query: 481 aagtgtcccagcatacatttatagtttaccacaggctacg 520
           |||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 aagtgttccagcatacatttatagtttaccacaggctacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)