BAC Information

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BAC

Clone NameMSMg01-095D03
Chromosome14 (Build37)
Map Location 117,157,974 - 117,158,272
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc5
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D03.T7 (MSMg01no095_d03.b1)MSMg01-095D03.TJ (MSMg01no095_d03.g1)
ACCAG312167AG312168
length697700
length of high quality
(start - end)
299 (54 - 352)288 (58 - 345)
definitionCHROMAT_FILE: MSMg01no095_d03.b1 PHD_FILE: MSMg01no095_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005CHROMAT_FILE: MSMg01no095_d03.g1 PHD_FILE: MSMg01no095_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCGGCGCTATACGACTCCTATACGGAGAGATCCGCGGAATCACTTTATT
CATAACCATTACAACTAAGGTAGGTAGCGAACAAAGGCTTGTAACCCCTT
GTAGAAAGAAATATAGCATTCGAATTTAGGAGCTTTCTTGCGGATATTGA
CCCATGATTAGACTTCCAAGAACATGTCTTAAGGAAACAATCAGATTGCA
ATTAAAGACCTGTGTACAAAATGGTGTTCCACATAACAGGTAAAACCTGA
AAGGATCATTAGCAGCCAACAATGGGTAATAACCAGATAAGGAATTATAC
CTACAATGAAACAGCATGTTGCATAAAATAATAACCCTCATGATTCATTA
AAGCGATCAGCATAATATTTTTAAAATATAGGAACTCAAATATATGCTTT
GAAAAGTTTTAAGAGAGAAGTGTTTTTATTTTAGCCAGTATGACCAATTA
AAAAGTCCCACTATATTGTAAACTATTTTCAATAAAAAATAAAAGAGAAA
AATTCATGTGACTGAGAGGAAAATAGCAAATGGCTTCTGAGTATGTTCAT
GGCTTTTCTATACATATACCAGCCCTATACAACGCAGTGTTAAAAGATGG
GTAAAGGGCTGGGCATGGTATTGCACACAATTCTAGGATATGGAAGTCGG
AGGCAAGTTCAAAGCTAGTCTAGCCTACATAGTTCCAGGACAGCCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGATCATTTCCCGTCATGATTGGAAATACACGGACATCTAGAG
CACTAAAATGAGGGCCTCCTTGTGGAGCACCCCAGTTCACTCCCAACACC
CACAATCCAATAGCTCACAATTAATTGTAGCTCTAGATTCAGGAGATCTG
GCACTTTCTGCTGGCTTCCAAGAGTACTGCACTCGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTTTCCAGAAGGCCAGAGGGGTCAGATAATATTAAA
AGATAAAATCTTTTAAACTATAAACAAGTGCAAGATAATTATTTTGTATG
CCCCTTCCCCTATTCAGGGATGCACTCCTGTGTTCCACATGACACAAAAT
TTATTAAACATTTTAAAAGAACATTAAGATCTAAACAAAAGAGATTATAG
GTCAGTAGCAGGCTTGTGGCAATATATTTAGCTCATATAAAATATTGTCT
CTTCGATTAAAGAATATGGATATATTTGTCTTTGTATCCTGAACTCACCT
CCAGATATTTCTGCCTTATTCTATCTACTCTATTAACCTTCCACCCCTTT
ATTACCTCCTCTCCGTATAGTATCTTCAATGCTTGTACGCACGATGATTT
CAAACGACTTATCCTTGTTCCTCGTGCTATTTATTCTTGCCCTCCCCTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d03.b1 MSMg01no095_d03.b1 CHROMAT_FILE:
MSMg01no095_d03.b1 PHD_FILE: MSMg01no095_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:08 2005
         (299 letters)



>mm_chr14_117157774_117158472
          Length = 699

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccattacaactaaggtaggtagcgaacaaaggcttgtaaccccttgtagaaagaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccattacaactaaggtaggtagcgaacaaaggcttgtaaccccttgtagaaagaaata 260

                                                                       
Query: 61  tagcattcgaatttaggagctttcttgcggatattgacccatgattagacttccaagaac 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 261 tagcattcgaatttaggagctttcttgcggatattgacctatgattagacttccaggaac 320

                                                                       
Query: 121 atgtcttaaggaaacaatcagattgcaattaaagacctgtgtacaaaatggtgttccaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 atgtcttaaggaaacaatcagattgcaattaaagacctgtgtacaaaatggtgttccata 380

                                                                       
Query: 181 taacaggtaaaacctgaaaggatcattagcagccaacaatgggtaataaccagataagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaggtaaaacctgaaaggatcattagcagccaacaatgggtaataaccagataagga 440

                                                                      
Query: 241 attatacctacaatgaaacagcatgttgcataaaataataaccctcatgattcattaaa 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatacctacaatgaaacagcatgttgcataaaataataaccctcatgattcattaaa 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)