BAC Information

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BAC

Clone NameMSMg01-095D05
Chromosome14 (Build37)
Map Location 96,428,077 - 96,428,696
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneKlhl1, LOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D05.T7 (MSMg01no095_d05.b1)MSMg01-095D05.TJ (MSMg01no095_d05.g1)
ACCAG312171AG312172
length709718
length of high quality
(start - end)
518 (33 - 550)616 (74 - 689)
definitionCHROMAT_FILE: MSMg01no095_d05.b1 PHD_FILE: MSMg01no095_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:09 2005CHROMAT_FILE: MSMg01no095_d05.g1 PHD_FILE: MSMg01no095_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCTTTCAC
ATTACATGTAATGATATTAGAAAATTTCTTACATGTGCTGCATAGTTCAT
ACCTGTGTGTTAACAAGGGTTGACTATCTTCAAGTATATTTGTTATCTTG
AAGAATAATTCATGTTTGTTAGAGAAACAACACATACTCTTTTTATATAC
ACAAGAATATACAAAAAGCACTACAAAGTATGGTAAATTGCATCTGCTTT
TAGGGCCTTTGTTTCATTGTTTCACGAAGTGGCTCTTATCTTCTTTCTTC
TCATCCACATCTAGCCTTGTGACCCAGGGAGATATCTATGTCTATGTCTA
TGTCTATGTCTATGTCTATGTCTATGTCTATGTCCATGTCCATGTCCATG
TCCATGTCCATGTCCATGTCCATGTCCATGTCCATGTCCATGTCTATGTC
TATGTCTATGTCTATGTCTACGTCCACGTCCACGTCCACGTCCACGTCCA
CGTCCACGTCCATGTCCATGTCCATACATATCATATACTATATATTTCTT
AAATGCACTTGCAATGGGTTGTGGGAAATATTAAAAAGGAATGGCAAGTT
CCTGTGCTTTATCCAGCTACTCTCAGCCCCAGTGATCTCCTGCAGATCTT
AACCTCCTGTAGACTTTCTGATTCTAAGCTCCTAAATCTCTCCCCCAGCC
TCCTAAATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGCATTTGCATCATTGACTGGAGAT
AATCTGAACAGCAAGAGCAAGCTTTAAACAGTGATTTTTAACATGGTGTC
CCTTCATGGGTTTTTTTTCACCCCTTTACAGCCCAAAGCATCAGAAAAGG
TAGACTCCAATAAAAGAAAGAAGAAAATAATACCTAAAAATAAAGCAAGA
AATGCCATCACTCCAACACCAATTTCCAAGGTAAAGAGATGTAAAAATGA
AAGAGCATGCACTATCTCAGTCCTATTTCAAATTCTGAGACTAAGCCTGC
TGTTCAGCTGCTGCTTAAAGAAAGCAAAGGATAAGGCATTTGAATTTCAA
CTAGATGTTTAAAGAGGGAGCGCTCTGAAAGTAATACCAGGGAATATATA
TGGGTGCTTAGAAAATTATATAATAGTTCAAATAATGGTTTTTCTTCAGT
ATGGAATAAATACCCCACATCATTGAATTGGATGTAAATTAAATCTAAAG
ACAAAAACTAAATAATAAGTATGAACAAAATCACTCATATTTAAACTCAA
TTAGCTCACTCTCTGTCATGTTTTATAAACTCAGAGAACATCAAATGAAG
ATGTATAGCACAACCATTTTGTGCTTGACATTTTACAGGAACATACTGAG
AACAAAGGAATATATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d05.g1 MSMg01no095_d05.g1 CHROMAT_FILE:
MSMg01no095_d05.g1 PHD_FILE: MSMg01no095_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:09 2005
         (616 letters)



>mm_chr14_96427877_96428896
          Length = 1020

 Score = 1164 bits (602), Expect = 0.0
 Identities = 614/620 (99%), Gaps = 4/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcatttgcatcattgactggagataatctgaacagcaagagcaagctttaaacagtg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 attgcatttgcatcattgactggagataatctgaatagcaagagcaagctttaaacagtg 260

                                                                       
Query: 61  atttttaacatggtgtcccttcatggg----ttttttttcacccctttacagcccaaagc 116
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 261 atttttaacatggtgtcccttcatggggtttttttttttcacccctttacagcccaaagc 320

                                                                       
Query: 117 atcagaaaaggtagactccaataaaagaaagaagaaaataatacctaaaaataaagcaag 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcagaaaaggtagactccaataaaagaaagaagaaaataatacctaaaaataaagcaag 380

                                                                       
Query: 177 aaatgccatcactccaacaccaatttccaaggtaaagagatgtaaaaatgaaagagcatg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgccatcactccaacaccaatttccaaggtaaagagatgtaaaaatgaaagagcatg 440

                                                                       
Query: 237 cactatctcagtcctatttcaaattctgagactaagcctgctgttcagctgctgcttaaa 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactatctcagtcctatttcaaattctgagactaagcctgctgttcagctgctgcttaaa 500

                                                                       
Query: 297 gaaagcaaaggataaggcatttgaatttcaactagatgtttaaagagggagcgctctgaa 356
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagcagaggataaggcatttgaatttcaactagatgtttaaagagggagcgctctgaa 560

                                                                       
Query: 357 agtaataccagggaatatatatgggtgcttagaaaattatataatagttcaaataatggt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaataccagggaatatatatgggtgcttagaaaattatataatagttcaaataatggt 620

                                                                       
Query: 417 ttttcttcagtatggaataaataccccacatcattgaattggatgtaaattaaatctaaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcttcagtatggaataaataccccacatcattgaattggatgtaaattaaatctaaa 680

                                                                       
Query: 477 gacaaaaactaaataataagtatgaacaaaatcactcatatttaaactcaattagctcac 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaaaaactaaataataagtatgaacaaaatcactcatatttaaactcaattagctcac 740

                                                                       
Query: 537 tctctgtcatgttttataaactcagagaacatcaaatgaagatgtatagcacaaccattt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctctgtcatgttttataaactcagagaacatcaaatgaagatgtatagcacaaccattt 800

                               
Query: 597 tgtgcttgacattttacagg 616
           ||||||||||||||||||||
Sbjct: 801 tgtgcttgacattttacagg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1020
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1010
Effective search space:   612060
Effective search space used:   612060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)