BAC Information

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BAC

Clone NameMSMg01-095O19
Chromosome14 (Build37)
Map Location 10,289,235 - 10,289,552
singlet/doubletsinglet
Overlap genenone
Upstream gene4930452B06Rik, LOC100041948
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O19.T7 (MSMg01no095_o19.b1)MSMg01-095O19.TJ (MSMg01no095_o19.g1)
ACCAG312724AG312725
length7071,089
length of high quality
(start - end)
318 (377 - 694)---
definitionCHROMAT_FILE: MSMg01no095_o19.b1 PHD_FILE: MSMg01no095_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:06 2005CHROMAT_FILE: MSMg01no095_o19.g1 PHD_FILE: MSMg01no095_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGTGCTAGCCCATTTTAAAGATAAAATCTGCATTATTAACATTGAG
CCAATCATGCCCCAAGCCTCAGGCTTTGTGACTTCCCTGATGTAAATACT
TCCATCATAGCCTGGTCCAGGCTAGAAAAGGACTGTCAATGATTACGAAA
TTGAGATTTGGTAGTAGCATAATAACTTAAAGCACACTGGACTTCAGTGA
ACAGCATACATTTCATAAAATATTCTATCATATAGTGAATAATGACAGAT
CTAAATATTCTCAACAAGTGAAGTACATAGGAGGCACTGGGTGATGAGCC
CTTAGAGTCTGTATTTGCACACTACGTTACTTCTAAGTTTAGCTTTGAAG
TAAAGCCATGTTAAACAGGCTAATCACATTCCTCAGTTTCACTGCAAGCA
CCTGAACGAGCAGTTATACCACACTGGCACACCAGTGCTTGGGAGAGAAG
TGGCTGCCTGACCCAGAGCTCCATGTCCTGTGCCAAAGGACACTAGAATG
AGTGGGTTCTCTTGTTATGTTTTCTCCTCACCTATTCGACCACACCCTCC
CTTTTCCCTTGCTTATCTCTTCATGCCCCCATCTCTTTTTCTTTCCTTCC
TTTTTACTTCTTTTGTTATGCTGGTAGCCTGTGCCTTTGCCACCCACTCC
TTTATCC
TTTTTTTTTTTTTTTTTGTTTTTNNCCCNNCCNCNNNNNNNNNNNNNNNN
NNNNNCTTTTATTTTTTTTTTTTTTTGGGNTTCTGTAGAAANNNNTCTCG
AGGGAGANNTTTTTCTCCCCTCTTAAAGAGGTTCTTGGGGGNNNNTTTTC
CTTCTCCTCTAAAATAGTGGGNAGGGAGGGGNNNNNNNNNNTNTCTNCCT
TTCCATTTCTCGTTTTTTTTTTTTCTTTTAAAAAAAGAGGGGGGGGGNNN
TTTNNNTTNNGNNTGTGTGTATTTTTTTTGTGGGTGTTGATTGTGGTGTT
TGGGAGGAANGAGAATTTTTATTTTTTTTTTTCTCCCCCTCCCTAATAAA
AAAAAGGAGAGGGGGGGGTTTTTTATTTTATTTTTTTTTATTTTGTTTTT
ATTTTTATTTTTTTTTTTTTCTTTTTATATTTTTATCTTTCTTGTATTTC
TTCATAATATATAATTCTCGCATCCAACACTACTTAAATTATTTTTTTTT
TTTTTTCTTAATCTTCTAATCTTTCACAACAGAAAAAAATAAATAACTTT
TTTTTATTANTTTTTCCTCAAAAGCAGNGCGCCCCCCCTAAGTGTACTTT
TTTATTTTTTTGTTTTTTCTTCTTTCCTCCTCTTTTTCCTATATAAAATA
AAAATAAAAATTTTTTTTGGGGGGGGGGTGGGGGGTGTCTTGCTTCTTTT
TTCTTCTTTTTTTTTTTTTTTGTTTTTCTTTCTCCTCTTTTTTCACTCTT
TTTCTGTTCTTTTTTTTTTCTCTTCGTGTTATCGCCCCCTTCCATTTTTT
GCTTTTTCTCCGTCCCTTTTTCTAATTTTCTATTTTTATCCCCCTCTTTC
ACCCTCCCTCGCTCCCCCTACTTTTTTATTTTCTTTTCCGTTGTGTTCTT
CTTATTCCTTTATTATTATTCCTCCTCGCCTTATTATTTTTCTTTCCTCT
TCTTTAATTCTCTGTTTCTCTTTTCTTTGTTCTTTTATTATATTAATGTC
TTGCTATTATTTTTTTATTTCATTTTTGCTTATTGTTTCTTCTACTTATC
TTTCTGCTCTTCCTTTTCTCCCACTCTATCTTACCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o19.b1 MSMg01no095_o19.b1 CHROMAT_FILE:
MSMg01no095_o19.b1 PHD_FILE: MSMg01no095_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:06 2005
         (318 letters)



>mm_chr14_10289035_10289752
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacttctaagtttagctttgaagtaaagccatgttaaacaggctaatcacattcctcag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttacttctaagttcagctttgaagtaaagccatgttaaacaggctaatcacattcctcag 459

                                                                       
Query: 61  tttcactgcaagcacctgaacgagcagttataccacactggcacaccagtgcttgggaga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttcactgcaagctcctgaacgagcagttataccacactggcacaccagtgcttgggaga 399

                                                                       
Query: 121 gaagtggctgcctgacccagagctccatgtcctgtgccaaaggacactagaatgagtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaagtggctgcctgacccagagctccatgtcctgtgccaaaggacactagaatgagtggg 339

                                                                       
Query: 181 ttctcttgttatgttttctcctcacctattcgaccacaccctcccttttcccttgcttat 240
           ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 338 ttctctttttatgttgtctcctcacctatccgaccacaccctcccttttcccttgcttat 279

                                                                       
Query: 241 ctcttcatgcccccatctctttttctttccttcctttttacttcttttgttatgctggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctcttcatgcccccatctctttttctttccttcctttttacttcttttgttatgctggta 219

                             
Query: 301 gcctgtgcctttgccacc 318
           ||||||||||||||||||
Sbjct: 218 gcctgtgcctttgccacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)