BAC Information

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BAC

Clone NameMSMg01-096H03
Chromosome14 (Build37)
Map Location 64,975,845 - 64,976,114
singlet/doubletsinglet
Overlap geneMsra
Upstream geneBlk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096H03.T7 (MSMg01no096_h03.b1)MSMg01-096H03.TJ (MSMg01no096_h03.g1)
ACCAG313120AG313121
length788774
length of high quality
(start - end)
288 (133 - 420)270 (125 - 394)
definitionCHROMAT_FILE: MSMg01no096_h03.b1 PHD_FILE: MSMg01no096_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:48 2005CHROMAT_FILE: MSMg01no096_h03.g1 PHD_FILE: MSMg01no096_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCCCNTTNCCCCGGCAA
TAGAAAGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAA
TCCGCGGAATTCATTCTACATTTCCACATGGTTTCAAATTCATTCTGCAG
CCCAGATTAGCCTTGAGCTCATAGCAAACCTCCTGCCTCAGTATCCTAAA
AGCTAGAATTATAAGCACGAGCTACTATGCTTAGTTGTTTAAGTCCATGG
TTTTTACATTGATATTAGTTGATGTTCAGCCTTCTGCCTTTGAGGCCAAT
ATCTTTGCAATGGTTAATCTCTATTGTCAGTGTGGCTGGACTTAGAATCA
TATAGGAGGCACACCATGCCTGGGCATGTCTGTTAAGGAAGAGGTTTAAT
TTAGGAGGGAAATCTCACCATGTTGAGGGCGGCATCATCTCATAGGCTGG
GCTTCCAGTCTGACTAAGGAGGACCACCGCTGAGCATCAGTGTTGATCTC
TTTCTGCTTCCTGATTGAGGATGCAATGCGACCAGCTGTTATATGTTCCC
GTTGTCTGTCCTCCCTTGCCATAATGCACTGTGCCCCCTGATTGTTCGAT
TATAATTAACCTCCTTCCTCCTTAAGCTGATTTCTGCAGGCTTTTGTCAC
AGCACCTATAATTGAGCCCCAGGCATTCTTCCCCCCCATTTTCTTCTTCT
TCCTGTTTGGTTCCACAAGCGTCTCCTCATGCTACTTTCACCTTCCTCTA
TTGCACTCCCGGTACCTTGTAGTATCCCTCTGTTCTTG
TTTTTTTTTTTTTTTNTNTTTTTTCTTTTCCCCTTTTTCCCTCCTTCCAC
ACCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATGGCTCTGTCAGCTCCAGAGCCT
GTGTTCCCCCTTCAGATTCTTATCGAAATGCCTTGGACGCCGGGTTCCAG
CTCTCTGCTTCCCAGACGCAGGCCCCAGTAAGCAAAAGCAAGCTACCTGG
GCTCCAAATGCATTCTAGACACAGCCCAGTCTCCCCCAGTCTGCTCTCCT
CTGACTCGATGCTTCCTCTTCACTGACTTCTTTATGAGAAGGGATTTCCA
GTGTCACCATCTTGTTGGTGCTCTGTATAGGGGGCTTTCTCAGAGACCAA
TATTTTGTCCAAAATTGTTTTGTAATAATAGCTTCTCTTGTTTTCTGATC
TTCAAACAACCCAGCTGACACCTGTATAAAACCTGCCCTACTTAGGGCTT
CTGAGAGAAGGGCTAAGGCTTGTATGTGGTTTATCCAATTCAGAGTTACT
CTGTTTATTCTTCACCCGAGTACATATTGAAGATGATTTATCAGCTTCCC
TGCCCTTCGTTGCCCACGGACATGGCATGTCAGGCTTGGCGAGGATGCGT
GCCTAGTCCATCAACCATTTGATGCTCCACATGATATTTAATTATCCTAT
AATCCGTCACTATGCTCTATCTTATGGTTCTATTGGCTTGTTGGCTCCTC
CCCCTCTTGATTTCCTTTTCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_h03.g1 MSMg01no096_h03.g1 CHROMAT_FILE:
MSMg01no096_h03.g1 PHD_FILE: MSMg01no096_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:48 2005
         (270 letters)



>mm_chr14_64975645_64976314
          Length = 670

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatggctctgtcagctccagagcctgtgttcccccttcagattcttatcgaaatgcctt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 201 acatggctctgtcagctccagagcctatgttcccccttcagattcttattgaaatgcctt 260

                                                                       
Query: 61  ggacgccgggttccagctctctgcttcccagacgcaggccccagtaagcaaaagcaagct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ggacgccgggttccagctctctgcttcccagacgcaggccccagtaagcaaaggcaagct 320

                                                                       
Query: 121 acctgggctccaaatgcattctagacacagcccagtctcccccagtctgctctcctctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgggctccaaatgcattctagacacagcccagtctcccccagtctgctctcctctga 380

                                                                       
Query: 181 ctcgatgcttcctcttcactgacttctttatgagaagggatttccagtgtcaccatcttg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ctcgatgcttcctcttcactgacttctttatgagaagggatttccagtatcaccatcttg 440

                                         
Query: 241 ttggtgctctgtatagggggctttctcaga 270
           ||||||||||||| ||||||||||||||||
Sbjct: 441 ttggtgctctgtaaagggggctttctcaga 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)